miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19300 5' -55.8 NC_004685.1 + 30173 0.66 0.744214
Target:  5'- --cGCUGAuguCCGGUGGGgcgucgUCCGGCUCGc -3'
miRNA:   3'- cauCGACU---GGUCGUCC------AGGCUGAGUc -5'
19300 5' -55.8 NC_004685.1 + 25919 0.66 0.712768
Target:  5'- --cGUcGACuCGGCGGGUgcCCGACUCGa -3'
miRNA:   3'- cauCGaCUG-GUCGUCCA--GGCUGAGUc -5'
19300 5' -55.8 NC_004685.1 + 37764 0.66 0.702116
Target:  5'- cGUGGUggaaGAUCAGCAGGU-CGACcugUCGGu -3'
miRNA:   3'- -CAUCGa---CUGGUCGUCCAgGCUG---AGUC- -5'
19300 5' -55.8 NC_004685.1 + 10452 0.67 0.680622
Target:  5'- -gAGCUGACaCAGCGGGUggCCua-UCGGg -3'
miRNA:   3'- caUCGACUG-GUCGUCCA--GGcugAGUC- -5'
19300 5' -55.8 NC_004685.1 + 24317 0.67 0.669801
Target:  5'- cGUGGCgGGCaGGCGGGUUCGGCg--- -3'
miRNA:   3'- -CAUCGaCUGgUCGUCCAGGCUGaguc -5'
19300 5' -55.8 NC_004685.1 + 11366 0.67 0.637172
Target:  5'- -aGGCUGuGCCGGCcgggccgaccaAGGUCCGcguGCUCGa -3'
miRNA:   3'- caUCGAC-UGGUCG-----------UCCAGGC---UGAGUc -5'
19300 5' -55.8 NC_004685.1 + 11575 0.68 0.604501
Target:  5'- -cGGCUGuCCacGGCAGGUCgCGGCgagccgcgCAGg -3'
miRNA:   3'- caUCGACuGG--UCGUCCAG-GCUGa-------GUC- -5'
19300 5' -55.8 NC_004685.1 + 15085 0.68 0.604501
Target:  5'- -gAGCUGcUCGGUgccgAGGUCCG-CUCGGg -3'
miRNA:   3'- caUCGACuGGUCG----UCCAGGCuGAGUC- -5'
19300 5' -55.8 NC_004685.1 + 62335 0.69 0.561303
Target:  5'- aGUAGCUGcCCGGCccGUugaCCGGCUCGu -3'
miRNA:   3'- -CAUCGACuGGUCGucCA---GGCUGAGUc -5'
19300 5' -55.8 NC_004685.1 + 34085 0.69 0.53367
Target:  5'- -aAGCUGAuCCGGCAGGugacgacguugcccuUcucccCCGGCUCGGg -3'
miRNA:   3'- caUCGACU-GGUCGUCC---------------A-----GGCUGAGUC- -5'
19300 5' -55.8 NC_004685.1 + 49326 0.7 0.508604
Target:  5'- -cGGCcgcGGCCAGCAGcUCCGACggCAGc -3'
miRNA:   3'- caUCGa--CUGGUCGUCcAGGCUGa-GUC- -5'
19300 5' -55.8 NC_004685.1 + 35406 0.7 0.458104
Target:  5'- -cGGCccGACCGGCAcGGUgaUCGACUCGGc -3'
miRNA:   3'- caUCGa-CUGGUCGU-CCA--GGCUGAGUC- -5'
19300 5' -55.8 NC_004685.1 + 28769 0.71 0.438662
Target:  5'- -cAGCUGcGCCAGCAGGcCgagCGugUCAGc -3'
miRNA:   3'- caUCGAC-UGGUCGUCCaG---GCugAGUC- -5'
19300 5' -55.8 NC_004685.1 + 13790 0.72 0.392213
Target:  5'- --uGCUGGCCcacaccgucGGCGGGUUCGGCgUCAGc -3'
miRNA:   3'- cauCGACUGG---------UCGUCCAGGCUG-AGUC- -5'
19300 5' -55.8 NC_004685.1 + 37681 0.72 0.383314
Target:  5'- -cGGCggGACCAGCGGcUCCGGCUUg- -3'
miRNA:   3'- caUCGa-CUGGUCGUCcAGGCUGAGuc -5'
19300 5' -55.8 NC_004685.1 + 53736 0.72 0.365923
Target:  5'- uGUGGCUGGCCgauGGCGGcGUCCacuuCUCGGa -3'
miRNA:   3'- -CAUCGACUGG---UCGUC-CAGGcu--GAGUC- -5'
19300 5' -55.8 NC_004685.1 + 19193 0.74 0.280271
Target:  5'- -gGGCUG-CCGGCcGGUUCGugUCAGc -3'
miRNA:   3'- caUCGACuGGUCGuCCAGGCugAGUC- -5'
19300 5' -55.8 NC_004685.1 + 52843 0.75 0.253327
Target:  5'- -cAGCuUGGCCAGCAGGUCgGACa--- -3'
miRNA:   3'- caUCG-ACUGGUCGUCCAGgCUGaguc -5'
19300 5' -55.8 NC_004685.1 + 51079 0.77 0.180246
Target:  5'- -cGGCaUGAUCAgauGCAGGUCCGACUCGc -3'
miRNA:   3'- caUCG-ACUGGU---CGUCCAGGCUGAGUc -5'
19300 5' -55.8 NC_004685.1 + 51275 1.08 0.001253
Target:  5'- cGUAGCUGACCAGCAGGUCCGACUCAGc -3'
miRNA:   3'- -CAUCGACUGGUCGUCCAGGCUGAGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.