miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19301 3' -56.1 NC_004685.1 + 49648 0.67 0.677722
Target:  5'- -cCGGuUCACCCGGCGGGUcuugguguagcGGUcCAGGu -3'
miRNA:   3'- guGCC-GGUGGGCUGUCCA-----------CUAuGUCC- -5'
19301 3' -56.1 NC_004685.1 + 32070 0.67 0.667097
Target:  5'- aCACGGCCugaCCGGCGGGcaGGUuccccCGGGc -3'
miRNA:   3'- -GUGCCGGug-GGCUGUCCa-CUAu----GUCC- -5'
19301 3' -56.1 NC_004685.1 + 15715 0.68 0.656441
Target:  5'- cCugGGCCAcCCCGAguUGGGgcucGGcGCAGGa -3'
miRNA:   3'- -GugCCGGU-GGGCU--GUCCa---CUaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 45136 0.68 0.656441
Target:  5'- gCAgGGCguCUcguCGACGGG-GAUGCGGGa -3'
miRNA:   3'- -GUgCCGguGG---GCUGUCCaCUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 51375 0.68 0.655374
Target:  5'- aCAgGGCCACcugcaCCGGCGGGUccuucggGAU-CAGGu -3'
miRNA:   3'- -GUgCCGGUG-----GGCUGUCCA-------CUAuGUCC- -5'
19301 3' -56.1 NC_004685.1 + 21719 0.68 0.645764
Target:  5'- gCACGGguucgguuCCG-CCGACAGcGUGAUGCAcGGc -3'
miRNA:   3'- -GUGCC--------GGUgGGCUGUC-CACUAUGU-CC- -5'
19301 3' -56.1 NC_004685.1 + 68641 0.68 0.645764
Target:  5'- cCGCGGCUcaACaCCGACuGGUGcu-CGGGc -3'
miRNA:   3'- -GUGCCGG--UG-GGCUGuCCACuauGUCC- -5'
19301 3' -56.1 NC_004685.1 + 2902 0.68 0.645764
Target:  5'- -uCGGgCACCCGGCcccagugccGGUGcgGCGGGc -3'
miRNA:   3'- guGCCgGUGGGCUGu--------CCACuaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 44951 0.68 0.645764
Target:  5'- gGCGGCUACUCG-CAGG--GUGCAGu -3'
miRNA:   3'- gUGCCGGUGGGCuGUCCacUAUGUCc -5'
19301 3' -56.1 NC_004685.1 + 19044 0.68 0.635075
Target:  5'- gAgGGCCACUCGcACuGcGUGGUGCuGGa -3'
miRNA:   3'- gUgCCGGUGGGC-UGuC-CACUAUGuCC- -5'
19301 3' -56.1 NC_004685.1 + 32907 0.68 0.631868
Target:  5'- gCAUGGCgguGCCCGACAaGGUGAacuccccgagagugUGCAGc -3'
miRNA:   3'- -GUGCCGg--UGGGCUGU-CCACU--------------AUGUCc -5'
19301 3' -56.1 NC_004685.1 + 46604 0.68 0.624384
Target:  5'- gGCGGUCACCCuGuuuCAGGUGAUcgucuaccuucACAuGGc -3'
miRNA:   3'- gUGCCGGUGGG-Cu--GUCCACUA-----------UGU-CC- -5'
19301 3' -56.1 NC_004685.1 + 29107 0.68 0.623315
Target:  5'- -cCGGCCGCgCCGGCccAGGUGGUcgacaccGCGGu -3'
miRNA:   3'- guGCCGGUG-GGCUG--UCCACUA-------UGUCc -5'
19301 3' -56.1 NC_004685.1 + 10137 0.68 0.603029
Target:  5'- uGCuGCgACCCGACGGGcug-GCAGGc -3'
miRNA:   3'- gUGcCGgUGGGCUGUCCacuaUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 933 0.68 0.603029
Target:  5'- gUACaGGCCGCaguCCuGCGGGcgGAUGCGGGg -3'
miRNA:   3'- -GUG-CCGGUG---GGcUGUCCa-CUAUGUCC- -5'
19301 3' -56.1 NC_004685.1 + 43199 0.68 0.603029
Target:  5'- gGCGGCCACCaaaGAcCAGGUugcGCAGa -3'
miRNA:   3'- gUGCCGGUGGg--CU-GUCCAcuaUGUCc -5'
19301 3' -56.1 NC_004685.1 + 31854 0.69 0.581768
Target:  5'- -uCGGCCACCUGAagcuggauGGGUGcgGCGGu -3'
miRNA:   3'- guGCCGGUGGGCUg-------UCCACuaUGUCc -5'
19301 3' -56.1 NC_004685.1 + 45213 0.69 0.581768
Target:  5'- cCGCGGCCGa--GcCGGGUGAUucgcaGCAGGa -3'
miRNA:   3'- -GUGCCGGUgggCuGUCCACUA-----UGUCC- -5'
19301 3' -56.1 NC_004685.1 + 14143 0.69 0.571193
Target:  5'- gCugGGCgaGCCCGAcCGGGUGA---AGGg -3'
miRNA:   3'- -GugCCGg-UGGGCU-GUCCACUaugUCC- -5'
19301 3' -56.1 NC_004685.1 + 2874 0.69 0.571193
Target:  5'- cCGCgGGCUgcuacgGCCCGACGGGUGAccuggugACGGu -3'
miRNA:   3'- -GUG-CCGG------UGGGCUGUCCACUa------UGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.