miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19301 5' -62.7 NC_004685.1 + 12648 0.66 0.416919
Target:  5'- gCUCgCCGCCgGGCGGGUcaaggugaaggucGGCCCGc -3'
miRNA:   3'- aGGGaGGUGGgUCGCCCAa------------CCGGGUc -5'
19301 5' -62.7 NC_004685.1 + 11905 0.66 0.411627
Target:  5'- gUUCUCUgagACCgAGCGGuucaUGGCCCAGa -3'
miRNA:   3'- aGGGAGG---UGGgUCGCCca--ACCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 2098 0.66 0.410749
Target:  5'- gUCCCauUCgGCCCAGgguugauCGGauGUUGGCUCGGa -3'
miRNA:   3'- -AGGG--AGgUGGGUC-------GCC--CAACCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 24348 0.66 0.402899
Target:  5'- cUCCCgcuUCaacaACCgCGGCGGGUUGGCg--- -3'
miRNA:   3'- -AGGG---AGg---UGG-GUCGCCCAACCGgguc -5'
19301 5' -62.7 NC_004685.1 + 28113 0.66 0.369188
Target:  5'- -aCCUCCACCguGgGGGc--GCCCAc -3'
miRNA:   3'- agGGAGGUGGguCgCCCaacCGGGUc -5'
19301 5' -62.7 NC_004685.1 + 21802 0.66 0.369188
Target:  5'- gUCCaUCaa-CCAcGCGGaGUUGGCCCGGc -3'
miRNA:   3'- -AGGgAGgugGGU-CGCC-CAACCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 61497 0.66 0.368371
Target:  5'- gCCgaCCGCCCGGCGGcGUcgcgacgaucauuUGGCCa-- -3'
miRNA:   3'- aGGgaGGUGGGUCGCC-CA-------------ACCGGguc -5'
19301 5' -62.7 NC_004685.1 + 68174 0.66 0.366739
Target:  5'- gCCaUCCACCaccucaugcggggcCAGCGGGUUcucuacgucGGCCUAGc -3'
miRNA:   3'- aGGgAGGUGG--------------GUCGCCCAA---------CCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 12198 0.67 0.337461
Target:  5'- --gUUCCGcCCCAGCGGGcgGGCCa-- -3'
miRNA:   3'- aggGAGGU-GGGUCGCCCaaCCGGguc -5'
19301 5' -62.7 NC_004685.1 + 33128 0.68 0.30066
Target:  5'- aCCCgcgUCGCCgGGCGcgccGGUgugcaGGCCCAGg -3'
miRNA:   3'- aGGGa--GGUGGgUCGC----CCAa----CCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 64178 0.68 0.280108
Target:  5'- cCCCggCCGCUCGGCGGcGaUGGCCg-- -3'
miRNA:   3'- aGGGa-GGUGGGUCGCC-CaACCGGguc -5'
19301 5' -62.7 NC_004685.1 + 49651 0.69 0.27351
Target:  5'- aCCCcgcgaugaUCCGcCCCGGCGGGUc-GCCCGa -3'
miRNA:   3'- aGGG--------AGGU-GGGUCGCCCAacCGGGUc -5'
19301 5' -62.7 NC_004685.1 + 31516 0.69 0.27351
Target:  5'- aCUCUUCgagcuuguuGCCCAGCGaGUUGGCCCc- -3'
miRNA:   3'- aGGGAGG---------UGGGUCGCcCAACCGGGuc -5'
19301 5' -62.7 NC_004685.1 + 8317 0.69 0.26006
Target:  5'- gCCC-CCGCCgAGCGGGUUcaccggcuacgacGGCgCGGu -3'
miRNA:   3'- aGGGaGGUGGgUCGCCCAA-------------CCGgGUC- -5'
19301 5' -62.7 NC_004685.1 + 53960 0.7 0.214256
Target:  5'- gUCCUgCGCCgAGCcccaacucGGGgUGGCCCAGg -3'
miRNA:   3'- aGGGAgGUGGgUCG--------CCCaACCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 60426 0.72 0.158017
Target:  5'- aUCCCgaCACCCAGCGGGUcacaGCuCCAGc -3'
miRNA:   3'- -AGGGagGUGGGUCGCCCAac--CG-GGUC- -5'
19301 5' -62.7 NC_004685.1 + 55957 0.74 0.121721
Target:  5'- gCCgUCCugCCAGCGGuccaGUgacaGGCCCAGu -3'
miRNA:   3'- aGGgAGGugGGUCGCC----CAa---CCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 49646 0.74 0.118551
Target:  5'- gCCCggUUCACCCGGCGGGUcuugguguagcGGUCCAGg -3'
miRNA:   3'- aGGG--AGGUGGGUCGCCCAa----------CCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 55539 0.77 0.073203
Target:  5'- gCCCUUCACCCGGuCGGGcucGCCCAGc -3'
miRNA:   3'- aGGGAGGUGGGUC-GCCCaacCGGGUC- -5'
19301 5' -62.7 NC_004685.1 + 37916 0.78 0.057298
Target:  5'- gUCCgUCCACCCAGCGGGcgGGUggUCGGa -3'
miRNA:   3'- -AGGgAGGUGGGUCGCCCaaCCG--GGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.