miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19302 5' -56.5 NC_004685.1 + 38756 0.66 0.718989
Target:  5'- gGGCgACCUgCUGGCCuacguguuCGUCUCGGucGGCGg -3'
miRNA:   3'- -UUG-UGGA-GGCUGGu-------GUAGAGCC--UCGC- -5'
19302 5' -56.5 NC_004685.1 + 12738 0.66 0.718989
Target:  5'- cGACGCCUgCGuguaccGCCGCAUCaUGGccAGCGg -3'
miRNA:   3'- -UUGUGGAgGC------UGGUGUAGaGCC--UCGC- -5'
19302 5' -56.5 NC_004685.1 + 56148 0.66 0.718989
Target:  5'- gGAC-CCUCaaGACCGCGgucggugccUCgUCGGGGCGg -3'
miRNA:   3'- -UUGuGGAGg-CUGGUGU---------AG-AGCCUCGC- -5'
19302 5' -56.5 NC_004685.1 + 57025 0.66 0.708494
Target:  5'- cGCACCUCCGacagcgGCCGCGUgCcgCGGcGCa -3'
miRNA:   3'- uUGUGGAGGC------UGGUGUA-Ga-GCCuCGc -5'
19302 5' -56.5 NC_004685.1 + 12561 0.66 0.708494
Target:  5'- -cCACCgCCGACCACAUCaUCccGGUGa -3'
miRNA:   3'- uuGUGGaGGCUGGUGUAG-AGccUCGC- -5'
19302 5' -56.5 NC_004685.1 + 19170 0.66 0.708494
Target:  5'- uACAUCggCGACCgguACAUgUCGGGGCa -3'
miRNA:   3'- uUGUGGagGCUGG---UGUAgAGCCUCGc -5'
19302 5' -56.5 NC_004685.1 + 3802 0.66 0.687299
Target:  5'- --uGCCgugCUGGCuCGCAUCUCGucGGGCGa -3'
miRNA:   3'- uugUGGa--GGCUG-GUGUAGAGC--CUCGC- -5'
19302 5' -56.5 NC_004685.1 + 43457 0.67 0.665901
Target:  5'- cGGCGCgUCCGGCgACAUCUggcUGGAcaucGCGu -3'
miRNA:   3'- -UUGUGgAGGCUGgUGUAGA---GCCU----CGC- -5'
19302 5' -56.5 NC_004685.1 + 41250 0.67 0.644382
Target:  5'- cGCGCgUUCGGCUugGUCgCGGAGUu -3'
miRNA:   3'- uUGUGgAGGCUGGugUAGaGCCUCGc -5'
19302 5' -56.5 NC_004685.1 + 1122 0.67 0.633601
Target:  5'- gAACACC-CCGA-CGCA--UCGGGGCGc -3'
miRNA:   3'- -UUGUGGaGGCUgGUGUagAGCCUCGC- -5'
19302 5' -56.5 NC_004685.1 + 58026 0.67 0.622819
Target:  5'- cGACGCCUCCuuGGCCuc--CUCGGGGuCGa -3'
miRNA:   3'- -UUGUGGAGG--CUGGuguaGAGCCUC-GC- -5'
19302 5' -56.5 NC_004685.1 + 35923 0.68 0.5692
Target:  5'- cGACACCgcgacgaCGcACCACGUCUCGccGGGCa -3'
miRNA:   3'- -UUGUGGag-----GC-UGGUGUAGAGC--CUCGc -5'
19302 5' -56.5 NC_004685.1 + 40529 0.69 0.536509
Target:  5'- gGACugUucggcuaUCCGACCGCAg--CGGAGCu -3'
miRNA:   3'- -UUGugG-------AGGCUGGUGUagaGCCUCGc -5'
19302 5' -56.5 NC_004685.1 + 27326 0.69 0.506536
Target:  5'- uACACg-CCGGCCACG--UCGGAGCu -3'
miRNA:   3'- uUGUGgaGGCUGGUGUagAGCCUCGc -5'
19302 5' -56.5 NC_004685.1 + 40811 0.69 0.506536
Target:  5'- --aACCUCggCGGCUAUAUCUCGGuGCu -3'
miRNA:   3'- uugUGGAG--GCUGGUGUAGAGCCuCGc -5'
19302 5' -56.5 NC_004685.1 + 51991 0.7 0.476307
Target:  5'- gAugACCUCCGcagacAgCACGUgCUCGGGGUGa -3'
miRNA:   3'- -UugUGGAGGC-----UgGUGUA-GAGCCUCGC- -5'
19302 5' -56.5 NC_004685.1 + 55450 0.71 0.42803
Target:  5'- cGCGCCgcaucaCCGAgaACAUCUCGGAGUu -3'
miRNA:   3'- uUGUGGa-----GGCUggUGUAGAGCCUCGc -5'
19302 5' -56.5 NC_004685.1 + 53162 0.75 0.241541
Target:  5'- -uCGCCUUCGGCCGCAggCU-GGAGCGg -3'
miRNA:   3'- uuGUGGAGGCUGGUGUa-GAgCCUCGC- -5'
19302 5' -56.5 NC_004685.1 + 19710 0.75 0.223683
Target:  5'- cGAgGCgUUCGGCCACAUCUCGuGGCGg -3'
miRNA:   3'- -UUgUGgAGGCUGGUGUAGAGCcUCGC- -5'
19302 5' -56.5 NC_004685.1 + 49947 1.07 0.001294
Target:  5'- gAACACCUCCGACCACAUCUCGGAGCGg -3'
miRNA:   3'- -UUGUGGAGGCUGGUGUAGAGCCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.