miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19305 3' -53.8 NC_004685.1 + 32271 0.66 0.865201
Target:  5'- --cGCCGGuGGcgCGGGCgguCCugGUGGCGCg -3'
miRNA:   3'- cuaUGGCC-UCuaGCUCG---GG--UACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 8327 0.66 0.865201
Target:  5'- --cGCUGGAGAagaCGGGUguCCAUG-CGCa -3'
miRNA:   3'- cuaUGGCCUCUa--GCUCG--GGUACuGCG- -5'
19305 3' -53.8 NC_004685.1 + 59797 0.66 0.86279
Target:  5'- gGGUGCCGccgcccGAG-UCGuccagcagugugccGGCCCGUGACGg -3'
miRNA:   3'- -CUAUGGC------CUCuAGC--------------UCGGGUACUGCg -5'
19305 3' -53.8 NC_004685.1 + 156 0.66 0.848729
Target:  5'- --gGCCGGGGAgcugcUCGGcuuGCCCuUG-CGCg -3'
miRNA:   3'- cuaUGGCCUCU-----AGCU---CGGGuACuGCG- -5'
19305 3' -53.8 NC_004685.1 + 41807 0.66 0.848729
Target:  5'- ---cCCGGuuuccGUCGAGCCgGUG-CGCa -3'
miRNA:   3'- cuauGGCCuc---UAGCUCGGgUACuGCG- -5'
19305 3' -53.8 NC_004685.1 + 45684 0.66 0.848729
Target:  5'- --aGCUGGAGGUCGGGCUgGgcaaGCu -3'
miRNA:   3'- cuaUGGCCUCUAGCUCGGgUacugCG- -5'
19305 3' -53.8 NC_004685.1 + 11382 0.66 0.848729
Target:  5'- --cGCCGGAGGcuggcgcgaaUCGAGCgCCGgguuucggcgGugGCc -3'
miRNA:   3'- cuaUGGCCUCU----------AGCUCG-GGUa---------CugCG- -5'
19305 3' -53.8 NC_004685.1 + 55148 0.66 0.848729
Target:  5'- ---gUCGGGGcucauGUCGAGCaCCAgcgcGGCGCg -3'
miRNA:   3'- cuauGGCCUC-----UAGCUCG-GGUa---CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 3552 0.67 0.813182
Target:  5'- -uUGCCGGuggcGAUCuGGCaUAUGGCGCa -3'
miRNA:   3'- cuAUGGCCu---CUAGcUCGgGUACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 37059 0.67 0.813182
Target:  5'- --cGCCGGuguuguuGGUCG-GCCCAgggGGCGg -3'
miRNA:   3'- cuaUGGCCu------CUAGCuCGGGUa--CUGCg -5'
19305 3' -53.8 NC_004685.1 + 2919 0.67 0.802857
Target:  5'- cAUGCCGGcccgaggugagcgAGAUCagcuaccGCCCGUGACGg -3'
miRNA:   3'- cUAUGGCC-------------UCUAGcu-----CGGGUACUGCg -5'
19305 3' -53.8 NC_004685.1 + 8552 0.67 0.794252
Target:  5'- -cUGCCGGAGcugacCGAGaCCCc-GACGCc -3'
miRNA:   3'- cuAUGGCCUCua---GCUC-GGGuaCUGCG- -5'
19305 3' -53.8 NC_004685.1 + 10617 0.68 0.774659
Target:  5'- --cACCGGAGGcgCGGGCCUAcaaccUGAaGCu -3'
miRNA:   3'- cuaUGGCCUCUa-GCUCGGGU-----ACUgCG- -5'
19305 3' -53.8 NC_004685.1 + 12654 0.68 0.771668
Target:  5'- --cGCCGGgcgggucaaggugaAGGUCG-GCCCGcagGGCGCc -3'
miRNA:   3'- cuaUGGCC--------------UCUAGCuCGGGUa--CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 7926 0.68 0.754489
Target:  5'- --gGCCGGAGcaCGAaaUCGUGACGCu -3'
miRNA:   3'- cuaUGGCCUCuaGCUcgGGUACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 26028 0.68 0.754489
Target:  5'- --gGCCGGAGAacgucuUCGAGCCaaaccgGGuCGCc -3'
miRNA:   3'- cuaUGGCCUCU------AGCUCGGgua---CU-GCG- -5'
19305 3' -53.8 NC_004685.1 + 28867 0.68 0.744214
Target:  5'- cGAga-CGGAGAUgGAGCgCCGcaaGGCGCu -3'
miRNA:   3'- -CUaugGCCUCUAgCUCG-GGUa--CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 23861 0.68 0.733828
Target:  5'- --aGCCGGAGAUUcugaacgagGGGCCgGccGACGCc -3'
miRNA:   3'- cuaUGGCCUCUAG---------CUCGGgUa-CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 53695 0.68 0.723343
Target:  5'- --cGCCGGAGAU-GAGUCCGuuUGGUGCc -3'
miRNA:   3'- cuaUGGCCUCUAgCUCGGGU--ACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 20901 0.68 0.722289
Target:  5'- aGGUGCCGGG---UGAGCCCAucgagauUGGCGa -3'
miRNA:   3'- -CUAUGGCCUcuaGCUCGGGU-------ACUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.