Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19305 | 3' | -53.8 | NC_004685.1 | + | 48148 | 1.11 | 0.001541 |
Target: 5'- gGAUACCGGAGAUCGAGCCCAUGACGCc -3' miRNA: 3'- -CUAUGGCCUCUAGCUCGGGUACUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 31405 | 0.75 | 0.37455 |
Target: 5'- cGAUGCCGGAGA-CGAGCUgGUcGACcaGCu -3' miRNA: 3'- -CUAUGGCCUCUaGCUCGGgUA-CUG--CG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 63240 | 0.74 | 0.419701 |
Target: 5'- gGGUGCCGGGcuguUCGGGCCagGUGAUGCc -3' miRNA: 3'- -CUAUGGCCUcu--AGCUCGGg-UACUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 12292 | 0.73 | 0.488101 |
Target: 5'- ---gUCGuGuGAUCGGGCCgAUGACGCu -3' miRNA: 3'- cuauGGC-CuCUAGCUCGGgUACUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 65335 | 0.71 | 0.603414 |
Target: 5'- cGAUACCcgucGGGGAccUCGAugcgcugGCCCccGACGCg -3' miRNA: 3'- -CUAUGG----CCUCU--AGCU-------CGGGuaCUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 45947 | 0.7 | 0.626273 |
Target: 5'- --cGCCGGAGuaggCGucuuccAGCCCcaGUGGCGCu -3' miRNA: 3'- cuaUGGCCUCua--GC------UCGGG--UACUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 34288 | 0.7 | 0.648066 |
Target: 5'- cGUGCCGG---UCGGGCCgGUGAucCGCg -3' miRNA: 3'- cUAUGGCCucuAGCUCGGgUACU--GCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 3223 | 0.7 | 0.658946 |
Target: 5'- aAUGCCGGggcggggucgGGGUCGGGCcggaCCAUcGGCGCc -3' miRNA: 3'- cUAUGGCC----------UCUAGCUCG----GGUA-CUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 64975 | 0.69 | 0.680621 |
Target: 5'- --gGCCGGGauGAUCGcguagccgcacAGCCCGUacagGACGCu -3' miRNA: 3'- cuaUGGCCU--CUAGC-----------UCGGGUA----CUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 69 | 0.69 | 0.691396 |
Target: 5'- --aGCCGGGGcgggcgCGcGCCCGUgugGACGCg -3' miRNA: 3'- cuaUGGCCUCua----GCuCGGGUA---CUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 20901 | 0.68 | 0.722289 |
Target: 5'- aGGUGCCGGG---UGAGCCCAucgagauUGGCGa -3' miRNA: 3'- -CUAUGGCCUcuaGCUCGGGU-------ACUGCg -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 53695 | 0.68 | 0.723343 |
Target: 5'- --cGCCGGAGAU-GAGUCCGuuUGGUGCc -3' miRNA: 3'- cuaUGGCCUCUAgCUCGGGU--ACUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 23861 | 0.68 | 0.733828 |
Target: 5'- --aGCCGGAGAUUcugaacgagGGGCCgGccGACGCc -3' miRNA: 3'- cuaUGGCCUCUAG---------CUCGGgUa-CUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 28867 | 0.68 | 0.744214 |
Target: 5'- cGAga-CGGAGAUgGAGCgCCGcaaGGCGCu -3' miRNA: 3'- -CUaugGCCUCUAgCUCG-GGUa--CUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 7926 | 0.68 | 0.754489 |
Target: 5'- --gGCCGGAGcaCGAaaUCGUGACGCu -3' miRNA: 3'- cuaUGGCCUCuaGCUcgGGUACUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 26028 | 0.68 | 0.754489 |
Target: 5'- --gGCCGGAGAacgucuUCGAGCCaaaccgGGuCGCc -3' miRNA: 3'- cuaUGGCCUCU------AGCUCGGgua---CU-GCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 12654 | 0.68 | 0.771668 |
Target: 5'- --cGCCGGgcgggucaaggugaAGGUCG-GCCCGcagGGCGCc -3' miRNA: 3'- cuaUGGCC--------------UCUAGCuCGGGUa--CUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 10617 | 0.68 | 0.774659 |
Target: 5'- --cACCGGAGGcgCGGGCCUAcaaccUGAaGCu -3' miRNA: 3'- cuaUGGCCUCUa-GCUCGGGU-----ACUgCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 8552 | 0.67 | 0.794252 |
Target: 5'- -cUGCCGGAGcugacCGAGaCCCc-GACGCc -3' miRNA: 3'- cuAUGGCCUCua---GCUC-GGGuaCUGCG- -5' |
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19305 | 3' | -53.8 | NC_004685.1 | + | 2919 | 0.67 | 0.802857 |
Target: 5'- cAUGCCGGcccgaggugagcgAGAUCagcuaccGCCCGUGACGg -3' miRNA: 3'- cUAUGGCC-------------UCUAGcu-----CGGGUACUGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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