miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19305 3' -53.8 NC_004685.1 + 3552 0.67 0.813182
Target:  5'- -uUGCCGGuggcGAUCuGGCaUAUGGCGCa -3'
miRNA:   3'- cuAUGGCCu---CUAGcUCGgGUACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 37059 0.67 0.813182
Target:  5'- --cGCCGGuguuguuGGUCG-GCCCAgggGGCGg -3'
miRNA:   3'- cuaUGGCCu------CUAGCuCGGGUa--CUGCg -5'
19305 3' -53.8 NC_004685.1 + 55148 0.66 0.848729
Target:  5'- ---gUCGGGGcucauGUCGAGCaCCAgcgcGGCGCg -3'
miRNA:   3'- cuauGGCCUC-----UAGCUCG-GGUa---CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 41807 0.66 0.848729
Target:  5'- ---cCCGGuuuccGUCGAGCCgGUG-CGCa -3'
miRNA:   3'- cuauGGCCuc---UAGCUCGGgUACuGCG- -5'
19305 3' -53.8 NC_004685.1 + 45684 0.66 0.848729
Target:  5'- --aGCUGGAGGUCGGGCUgGgcaaGCu -3'
miRNA:   3'- cuaUGGCCUCUAGCUCGGgUacugCG- -5'
19305 3' -53.8 NC_004685.1 + 11382 0.66 0.848729
Target:  5'- --cGCCGGAGGcuggcgcgaaUCGAGCgCCGgguuucggcgGugGCc -3'
miRNA:   3'- cuaUGGCCUCU----------AGCUCG-GGUa---------CugCG- -5'
19305 3' -53.8 NC_004685.1 + 156 0.66 0.848729
Target:  5'- --gGCCGGGGAgcugcUCGGcuuGCCCuUG-CGCg -3'
miRNA:   3'- cuaUGGCCUCU-----AGCU---CGGGuACuGCG- -5'
19305 3' -53.8 NC_004685.1 + 59797 0.66 0.86279
Target:  5'- gGGUGCCGccgcccGAG-UCGuccagcagugugccGGCCCGUGACGg -3'
miRNA:   3'- -CUAUGGC------CUCuAGC--------------UCGGGUACUGCg -5'
19305 3' -53.8 NC_004685.1 + 8327 0.66 0.865201
Target:  5'- --cGCUGGAGAagaCGGGUguCCAUG-CGCa -3'
miRNA:   3'- cuaUGGCCUCUa--GCUCG--GGUACuGCG- -5'
19305 3' -53.8 NC_004685.1 + 32271 0.66 0.865201
Target:  5'- --cGCCGGuGGcgCGGGCgguCCugGUGGCGCg -3'
miRNA:   3'- cuaUGGCC-UCuaGCUCG---GG--UACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.