miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19305 3' -53.8 NC_004685.1 + 69 0.69 0.691396
Target:  5'- --aGCCGGGGcgggcgCGcGCCCGUgugGACGCg -3'
miRNA:   3'- cuaUGGCCUCua----GCuCGGGUA---CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 64975 0.69 0.680621
Target:  5'- --gGCCGGGauGAUCGcguagccgcacAGCCCGUacagGACGCu -3'
miRNA:   3'- cuaUGGCCU--CUAGC-----------UCGGGUA----CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 3223 0.7 0.658946
Target:  5'- aAUGCCGGggcggggucgGGGUCGGGCcggaCCAUcGGCGCc -3'
miRNA:   3'- cUAUGGCC----------UCUAGCUCG----GGUA-CUGCG- -5'
19305 3' -53.8 NC_004685.1 + 34288 0.7 0.648066
Target:  5'- cGUGCCGG---UCGGGCCgGUGAucCGCg -3'
miRNA:   3'- cUAUGGCCucuAGCUCGGgUACU--GCG- -5'
19305 3' -53.8 NC_004685.1 + 45947 0.7 0.626273
Target:  5'- --cGCCGGAGuaggCGucuuccAGCCCcaGUGGCGCu -3'
miRNA:   3'- cuaUGGCCUCua--GC------UCGGG--UACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 65335 0.71 0.603414
Target:  5'- cGAUACCcgucGGGGAccUCGAugcgcugGCCCccGACGCg -3'
miRNA:   3'- -CUAUGG----CCUCU--AGCU-------CGGGuaCUGCG- -5'
19305 3' -53.8 NC_004685.1 + 12292 0.73 0.488101
Target:  5'- ---gUCGuGuGAUCGGGCCgAUGACGCu -3'
miRNA:   3'- cuauGGC-CuCUAGCUCGGgUACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 63240 0.74 0.419701
Target:  5'- gGGUGCCGGGcuguUCGGGCCagGUGAUGCc -3'
miRNA:   3'- -CUAUGGCCUcu--AGCUCGGg-UACUGCG- -5'
19305 3' -53.8 NC_004685.1 + 31405 0.75 0.37455
Target:  5'- cGAUGCCGGAGA-CGAGCUgGUcGACcaGCu -3'
miRNA:   3'- -CUAUGGCCUCUaGCUCGGgUA-CUG--CG- -5'
19305 3' -53.8 NC_004685.1 + 48148 1.11 0.001541
Target:  5'- gGAUACCGGAGAUCGAGCCCAUGACGCc -3'
miRNA:   3'- -CUAUGGCCUCUAGCUCGGGUACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.