miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19307 3' -56.1 NC_004685.1 + 57912 0.66 0.739448
Target:  5'- cCACCggagUGGGCGGcccgccGUCCuuGCCGGGa-- -3'
miRNA:   3'- cGUGGa---ACCUGUC------CAGG--UGGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 32079 0.66 0.718622
Target:  5'- -gACCggcGGGCAGGuUCCcCCGGGc-- -3'
miRNA:   3'- cgUGGaa-CCUGUCC-AGGuGGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 66467 0.66 0.70808
Target:  5'- cCGCCUUGGugGGGacguaccacaccUCCAggUCGGGg-- -3'
miRNA:   3'- cGUGGAACCugUCC------------AGGU--GGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 48210 0.66 0.697465
Target:  5'- uGCGCgUUGGuCGGGUUgACCGGc--- -3'
miRNA:   3'- -CGUGgAACCuGUCCAGgUGGCCcaau -5'
19307 3' -56.1 NC_004685.1 + 8496 0.66 0.697465
Target:  5'- aGCGCC--GGugGGGUCCgcuACCGGa--- -3'
miRNA:   3'- -CGUGGaaCCugUCCAGG---UGGCCcaau -5'
19307 3' -56.1 NC_004685.1 + 51386 0.67 0.686789
Target:  5'- uGCACC---GGCGGGUCCuuCGGGa-- -3'
miRNA:   3'- -CGUGGaacCUGUCCAGGugGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 68301 0.67 0.672836
Target:  5'- cGCGCCgcgGGuccgaguguGCGGGUCCGagugugcgugcgccCCGGGUc- -3'
miRNA:   3'- -CGUGGaa-CC---------UGUCCAGGU--------------GGCCCAau -5'
19307 3' -56.1 NC_004685.1 + 29998 0.67 0.665296
Target:  5'- uCGCCUgcGACAGGcCCGCCaGGGg-- -3'
miRNA:   3'- cGUGGAacCUGUCCaGGUGG-CCCaau -5'
19307 3' -56.1 NC_004685.1 + 15086 0.68 0.600406
Target:  5'- aGCugCUcGGuGCcgAGGUCCGCuCGGGUg- -3'
miRNA:   3'- -CGugGAaCC-UG--UCCAGGUG-GCCCAau -5'
19307 3' -56.1 NC_004685.1 + 37665 0.68 0.568192
Target:  5'- uCGCCUUGG---GGUCCACCGGcGg-- -3'
miRNA:   3'- cGUGGAACCuguCCAGGUGGCC-Caau -5'
19307 3' -56.1 NC_004685.1 + 31607 0.69 0.557544
Target:  5'- gGCAUCgacUGGACGGGUCCgACCGa---- -3'
miRNA:   3'- -CGUGGa--ACCUGUCCAGG-UGGCccaau -5'
19307 3' -56.1 NC_004685.1 + 35866 0.69 0.536429
Target:  5'- aCACCUcGGACAGG-CC-CUGGGa-- -3'
miRNA:   3'- cGUGGAaCCUGUCCaGGuGGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 39094 0.71 0.445599
Target:  5'- cGCgGCC---GACGGGUUCGCCGGGUUc -3'
miRNA:   3'- -CG-UGGaacCUGUCCAGGUGGCCCAAu -5'
19307 3' -56.1 NC_004685.1 + 65510 0.71 0.426583
Target:  5'- -aACCgucGGGCAGGcUCgGCCGGGUg- -3'
miRNA:   3'- cgUGGaa-CCUGUCC-AGgUGGCCCAau -5'
19307 3' -56.1 NC_004685.1 + 23752 0.71 0.426583
Target:  5'- uCGCCgugucGGGCAGGUCCagcuuGCCGGGc-- -3'
miRNA:   3'- cGUGGaa---CCUGUCCAGG-----UGGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 33872 0.71 0.426583
Target:  5'- cGCugCUcGGugAGGaCUACCGGGg-- -3'
miRNA:   3'- -CGugGAaCCugUCCaGGUGGCCCaau -5'
19307 3' -56.1 NC_004685.1 + 59281 0.73 0.339217
Target:  5'- uGCACCUccugugaGGACAGGcCCACCGcGGc-- -3'
miRNA:   3'- -CGUGGAa------CCUGUCCaGGUGGC-CCaau -5'
19307 3' -56.1 NC_004685.1 + 56112 0.75 0.24617
Target:  5'- aCAgCUUGGACAGGUCCcGCCGGu--- -3'
miRNA:   3'- cGUgGAACCUGUCCAGG-UGGCCcaau -5'
19307 3' -56.1 NC_004685.1 + 47432 1.09 0.001116
Target:  5'- cGCACCUUGGACAGGUCCACCGGGUUAc -3'
miRNA:   3'- -CGUGGAACCUGUCCAGGUGGCCCAAU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.