miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19307 5' -57.1 NC_004685.1 + 43869 0.66 0.611737
Target:  5'- cGAgAGC-CCG-CGGCGcUGACCGGCc- -3'
miRNA:   3'- -UUgUCGaGGCuGUCGC-ACUGGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 14073 0.66 0.611737
Target:  5'- cGCGGCUUCGGCcgaggcaucccaGGCGUcGACguGCUg -3'
miRNA:   3'- uUGUCGAGGCUG------------UCGCA-CUGguCGAa -5'
19307 5' -57.1 NC_004685.1 + 15746 0.66 0.600762
Target:  5'- -uCAGCaagCaCGACGaCGUGGCCAGCUc -3'
miRNA:   3'- uuGUCGa--G-GCUGUcGCACUGGUCGAa -5'
19307 5' -57.1 NC_004685.1 + 62926 0.66 0.589815
Target:  5'- gAAguGCUUCGACGGCGacaUGcCCGGCc- -3'
miRNA:   3'- -UUguCGAGGCUGUCGC---ACuGGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 48187 0.67 0.568035
Target:  5'- gGGCAGCaCCGucucCGGCGUGACgCGGUa- -3'
miRNA:   3'- -UUGUCGaGGCu---GUCGCACUG-GUCGaa -5'
19307 5' -57.1 NC_004685.1 + 21727 0.67 0.557219
Target:  5'- -uCGGUuccgCCGACAGCGUGAUgcaCGGCg- -3'
miRNA:   3'- uuGUCGa---GGCUGUCGCACUG---GUCGaa -5'
19307 5' -57.1 NC_004685.1 + 53358 0.67 0.557219
Target:  5'- cGCGGCgCCGguggccGCGGCGaugcUGGCCAGCUc -3'
miRNA:   3'- uUGUCGaGGC------UGUCGC----ACUGGUCGAa -5'
19307 5' -57.1 NC_004685.1 + 42468 0.67 0.546463
Target:  5'- cAACGGCcUgGGCAGCG-GcACCAGCUUc -3'
miRNA:   3'- -UUGUCGaGgCUGUCGCaC-UGGUCGAA- -5'
19307 5' -57.1 NC_004685.1 + 677 0.67 0.546463
Target:  5'- cGGCAGCgcgcauaaacUUCGGCAGCGUGGgUGGCg- -3'
miRNA:   3'- -UUGUCG----------AGGCUGUCGCACUgGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 56374 0.67 0.535774
Target:  5'- -cCAGCUCaGcCAGCuUGACCAGCa- -3'
miRNA:   3'- uuGUCGAGgCuGUCGcACUGGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 22539 0.67 0.532581
Target:  5'- cGCGGaCUCCGcGCAGCaagcgcuguucucgGUGACCAGUg- -3'
miRNA:   3'- uUGUC-GAGGC-UGUCG--------------CACUGGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 49336 0.68 0.483566
Target:  5'- cAGCAGCUCCGACGGCagcaGUGugUcGUc- -3'
miRNA:   3'- -UUGUCGAGGCUGUCG----CACugGuCGaa -5'
19307 5' -57.1 NC_004685.1 + 54564 0.68 0.483566
Target:  5'- cACGGCcaUCCGAC-GCGUGAUCgAGCa- -3'
miRNA:   3'- uUGUCG--AGGCUGuCGCACUGG-UCGaa -5'
19307 5' -57.1 NC_004685.1 + 63365 0.68 0.473413
Target:  5'- cGCAGUUCCaGGCGGCGUaGCC-GCUUu -3'
miRNA:   3'- uUGUCGAGG-CUGUCGCAcUGGuCGAA- -5'
19307 5' -57.1 NC_004685.1 + 25419 0.68 0.463369
Target:  5'- gGGCAGUcgucUUCGAUGGCGUGGCCcacccAGCUg -3'
miRNA:   3'- -UUGUCG----AGGCUGUCGCACUGG-----UCGAa -5'
19307 5' -57.1 NC_004685.1 + 21067 0.68 0.462371
Target:  5'- cGCAGCgUCCGGCcgucggucugcagGGCGUGGCUGGUg- -3'
miRNA:   3'- uUGUCG-AGGCUG-------------UCGCACUGGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 15967 0.69 0.443622
Target:  5'- cGACGGCUCCGACGGCuaccccauCCGGUUc -3'
miRNA:   3'- -UUGUCGAGGCUGUCGcacu----GGUCGAa -5'
19307 5' -57.1 NC_004685.1 + 12072 0.69 0.424358
Target:  5'- aAGCAGCUgaUCGACGGCcUGGCCAaGCg- -3'
miRNA:   3'- -UUGUCGA--GGCUGUCGcACUGGU-CGaa -5'
19307 5' -57.1 NC_004685.1 + 26438 0.7 0.378469
Target:  5'- --aAGCUCCGACGGUcacgaGACCGGCg- -3'
miRNA:   3'- uugUCGAGGCUGUCGca---CUGGUCGaa -5'
19307 5' -57.1 NC_004685.1 + 34651 0.72 0.297175
Target:  5'- cGACaAGCUCUGGCAGCGc-GCCGGCg- -3'
miRNA:   3'- -UUG-UCGAGGCUGUCGCacUGGUCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.