miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19308 5' -49.4 NC_004685.1 + 33847 0.67 0.967718
Target:  5'- --aCACcUCGAUGCCagggUGAUACggGCc -3'
miRNA:   3'- gaaGUGaAGCUACGGg---ACUAUGagCG- -5'
19308 5' -49.4 NC_004685.1 + 49851 0.67 0.961956
Target:  5'- -aUCAUcUCGcgGCCCUcagggucggccgacaGGUAgUCGCg -3'
miRNA:   3'- gaAGUGaAGCuaCGGGA---------------CUAUgAGCG- -5'
19308 5' -49.4 NC_004685.1 + 3406 0.67 0.953362
Target:  5'- --gCGCUUccggcgaccagcggcCGAUGCCCUGAUugcacggGC-CGCa -3'
miRNA:   3'- gaaGUGAA---------------GCUACGGGACUA-------UGaGCG- -5'
19308 5' -49.4 NC_004685.1 + 6005 0.67 0.952035
Target:  5'- ---aGCUUCGAggcGUCCUcGAUGC-CGCg -3'
miRNA:   3'- gaagUGAAGCUa--CGGGA-CUAUGaGCG- -5'
19308 5' -49.4 NC_004685.1 + 50719 0.68 0.942546
Target:  5'- gUUCACccuggUCGAUGCUCaGGUAgUCGg -3'
miRNA:   3'- gAAGUGa----AGCUACGGGaCUAUgAGCg -5'
19308 5' -49.4 NC_004685.1 + 24831 0.71 0.844391
Target:  5'- --gCACUggUCGAUGCCCgcggcGAUggACUUGCc -3'
miRNA:   3'- gaaGUGA--AGCUACGGGa----CUA--UGAGCG- -5'
19308 5' -49.4 NC_004685.1 + 69314 0.71 0.844391
Target:  5'- ---gGCUgUCGAUGCgCUGGUgaccGCUCGCc -3'
miRNA:   3'- gaagUGA-AGCUACGgGACUA----UGAGCG- -5'
19308 5' -49.4 NC_004685.1 + 50390 0.71 0.835406
Target:  5'- aUUCGCUg-GGUGUCCUcaaGGUugUCGCu -3'
miRNA:   3'- gAAGUGAagCUACGGGA---CUAugAGCG- -5'
19308 5' -49.4 NC_004685.1 + 59368 0.74 0.680034
Target:  5'- --cCGCcUCGAUGCCCuUGAgcuguccccGCUCGCg -3'
miRNA:   3'- gaaGUGaAGCUACGGG-ACUa--------UGAGCG- -5'
19308 5' -49.4 NC_004685.1 + 47328 1.12 0.003586
Target:  5'- uCUUCACUUCGAUGCCCUGAUACUCGCc -3'
miRNA:   3'- -GAAGUGAAGCUACGGGACUAUGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.