miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19313 3' -61.6 NC_004685.1 + 57904 0.66 0.478169
Target:  5'- aUGCgCCGcGCCuCGGcgauGGCUgCGUGCa -3'
miRNA:   3'- gACG-GGCaCGG-GCUu---CCGAgGCACGc -5'
19313 3' -61.6 NC_004685.1 + 40771 0.66 0.440639
Target:  5'- -cGCCCagcgGCCCGGGucgaaguccuGGUUCCG-GCGg -3'
miRNA:   3'- gaCGGGca--CGGGCUU----------CCGAGGCaCGC- -5'
19313 3' -61.6 NC_004685.1 + 16971 0.66 0.43152
Target:  5'- aCUGCCCG-GCCggCGAGGGUgggcagaccugCCGcUGCa -3'
miRNA:   3'- -GACGGGCaCGG--GCUUCCGa----------GGC-ACGc -5'
19313 3' -61.6 NC_004685.1 + 4186 0.67 0.387642
Target:  5'- cCUGCCCGacgguuaCCCGguGGUggCGUGCGg -3'
miRNA:   3'- -GACGGGCac-----GGGCuuCCGagGCACGC- -5'
19313 3' -61.6 NC_004685.1 + 37089 0.67 0.379225
Target:  5'- -gGCCgGUGCCgGuguGCUgCGUGCGg -3'
miRNA:   3'- gaCGGgCACGGgCuucCGAgGCACGC- -5'
19313 3' -61.6 NC_004685.1 + 1577 0.68 0.331351
Target:  5'- gCUGUCCGUGCCUGug---UCCGUGCc -3'
miRNA:   3'- -GACGGGCACGGGCuuccgAGGCACGc -5'
19313 3' -61.6 NC_004685.1 + 24392 0.69 0.294966
Target:  5'- uUGCCUGgGCCaGAAGGgaaUCCGUGCc -3'
miRNA:   3'- gACGGGCaCGGgCUUCCg--AGGCACGc -5'
19313 3' -61.6 NC_004685.1 + 37604 0.7 0.268156
Target:  5'- gUGCCCGggggaaccUGCCCGccGGUcaggCCGUGUGu -3'
miRNA:   3'- gACGGGC--------ACGGGCuuCCGa---GGCACGC- -5'
19313 3' -61.6 NC_004685.1 + 66795 0.71 0.215057
Target:  5'- -gGCCgGgUGCCCGAuccuGGCcagcgCCGUGCGc -3'
miRNA:   3'- gaCGGgC-ACGGGCUu---CCGa----GGCACGC- -5'
19313 3' -61.6 NC_004685.1 + 2244 0.72 0.199469
Target:  5'- cCUGCCUGccGCCCGGccGGGCugaugUCUGUGCa -3'
miRNA:   3'- -GACGGGCa-CGGGCU--UCCG-----AGGCACGc -5'
19313 3' -61.6 NC_004685.1 + 13067 0.73 0.154443
Target:  5'- -cGCCC-UGCCUGAGGGCcaUCCGUGg- -3'
miRNA:   3'- gaCGGGcACGGGCUUCCG--AGGCACgc -5'
19313 3' -61.6 NC_004685.1 + 44284 1.09 0.000337
Target:  5'- aCUGCCCGUGCCCGAAGGCUCCGUGCGg -3'
miRNA:   3'- -GACGGGCACGGGCUUCCGAGGCACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.