miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19313 5' -55.9 NC_004685.1 + 37873 0.66 0.740674
Target:  5'- -gCGUCAGCCAGcCgCGUCgGCGAGa- -3'
miRNA:   3'- uaGCGGUUGGUCuG-GUAGaCGCUCcu -5'
19313 5' -55.9 NC_004685.1 + 50094 0.66 0.740674
Target:  5'- --gGUUGACCAGcgcguUCAUCUGCGGGGu -3'
miRNA:   3'- uagCGGUUGGUCu----GGUAGACGCUCCu -5'
19313 5' -55.9 NC_004685.1 + 9435 0.66 0.730238
Target:  5'- --gGCCGACCGGcGCCGUa--CGGGGAg -3'
miRNA:   3'- uagCGGUUGGUC-UGGUAgacGCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 43941 0.66 0.719706
Target:  5'- -aCGCCAACCAGuacACCAUCggcauCGAGu- -3'
miRNA:   3'- uaGCGGUUGGUC---UGGUAGac---GCUCcu -5'
19313 5' -55.9 NC_004685.1 + 46070 0.66 0.709087
Target:  5'- gGUCcCCAcccagugguGCCAGAuCCAUCgaccGCGGGGGc -3'
miRNA:   3'- -UAGcGGU---------UGGUCU-GGUAGa---CGCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 18271 0.66 0.709087
Target:  5'- gGUCGCCGACCauuGGGCgGgguacagCgGCGAGGu -3'
miRNA:   3'- -UAGCGGUUGG---UCUGgUa------GaCGCUCCu -5'
19313 5' -55.9 NC_004685.1 + 37250 0.66 0.698395
Target:  5'- -cCGUCGugCAGGCCAUCcGCGGa-- -3'
miRNA:   3'- uaGCGGUugGUCUGGUAGaCGCUccu -5'
19313 5' -55.9 NC_004685.1 + 37622 0.67 0.676832
Target:  5'- -cCGCCggUCAGGCCGUgUGuCGuGGu -3'
miRNA:   3'- uaGCGGuuGGUCUGGUAgAC-GCuCCu -5'
19313 5' -55.9 NC_004685.1 + 2252 0.67 0.665983
Target:  5'- -cCGcCCGGCCGGGCUgauGUCUGUGcauGGAa -3'
miRNA:   3'- uaGC-GGUUGGUCUGG---UAGACGCu--CCU- -5'
19313 5' -55.9 NC_004685.1 + 38228 0.67 0.644201
Target:  5'- cAUCGUCGGcguccucggccCCGGcACCAUCgGCGAGGc -3'
miRNA:   3'- -UAGCGGUU-----------GGUC-UGGUAGaCGCUCCu -5'
19313 5' -55.9 NC_004685.1 + 6770 0.67 0.633288
Target:  5'- --aGCgAGCCGGugCGUCUGCGuGa- -3'
miRNA:   3'- uagCGgUUGGUCugGUAGACGCuCcu -5'
19313 5' -55.9 NC_004685.1 + 53380 0.67 0.622375
Target:  5'- -aUGCUGGCCAGcUCGUCggcgGUGAGGAu -3'
miRNA:   3'- uaGCGGUUGGUCuGGUAGa---CGCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 68161 0.68 0.61147
Target:  5'- cAUCGCCGAaCuGGCCAUCcaccaccucaUGCGGGGc -3'
miRNA:   3'- -UAGCGGUUgGuCUGGUAG----------ACGCUCCu -5'
19313 5' -55.9 NC_004685.1 + 9793 0.68 0.600583
Target:  5'- uUCGCCuACCGcGGCCGcCgcgGCGAGGu -3'
miRNA:   3'- uAGCGGuUGGU-CUGGUaGa--CGCUCCu -5'
19313 5' -55.9 NC_004685.1 + 1278 0.68 0.599495
Target:  5'- cAUCGCCAGCUcGGCCAcggcaucagacacUCcGuCGAGGAu -3'
miRNA:   3'- -UAGCGGUUGGuCUGGU-------------AGaC-GCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 20083 0.68 0.589722
Target:  5'- uUCGUCGGCCAGcCCGcCUaCGAGGGc -3'
miRNA:   3'- uAGCGGUUGGUCuGGUaGAcGCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 38289 0.68 0.578897
Target:  5'- cUCGUCu-CCGGcAUCGUCgGCGAGGAc -3'
miRNA:   3'- uAGCGGuuGGUC-UGGUAGaCGCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 28569 0.73 0.306387
Target:  5'- cAUCGCUAGCCAGGCUGUCgcgcgcgGCGAuGAa -3'
miRNA:   3'- -UAGCGGUUGGUCUGGUAGa------CGCUcCU- -5'
19313 5' -55.9 NC_004685.1 + 7946 0.81 0.091777
Target:  5'- -aCGCUggaccgAGCCaAGGCCAUCUGCGAGGAg -3'
miRNA:   3'- uaGCGG------UUGG-UCUGGUAGACGCUCCU- -5'
19313 5' -55.9 NC_004685.1 + 44318 1.07 0.001382
Target:  5'- cAUCGCCAACCAGACCAUCUGCGAGGAg -3'
miRNA:   3'- -UAGCGGUUGGUCUGGUAGACGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.