miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19314 5' -56.4 NC_004685.1 + 34442 0.66 0.722236
Target:  5'- gCGUGUUGUgGCcGCGGGCaccccguugCGUAGGUGGc -3'
miRNA:   3'- -GCACGACG-CGuUGUCUG---------GCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 18993 0.66 0.711736
Target:  5'- --gGCUGCGC-GCAGAaccaCGCgaAGGUGu -3'
miRNA:   3'- gcaCGACGCGuUGUCUg---GCG--UCCACu -5'
19314 5' -56.4 NC_004685.1 + 38000 0.66 0.711736
Target:  5'- gGUGgUGaCGCAggGCGcGACCGCGGGc-- -3'
miRNA:   3'- gCACgAC-GCGU--UGU-CUGGCGUCCacu -5'
19314 5' -56.4 NC_004685.1 + 40926 0.66 0.711736
Target:  5'- -cUGCUgGCGCAGCugauccugggAGACCG-AGGUGu -3'
miRNA:   3'- gcACGA-CGCGUUG----------UCUGGCgUCCACu -5'
19314 5' -56.4 NC_004685.1 + 10059 0.66 0.679825
Target:  5'- aCGUGUggaucaUGCGCGACcugGGGCCGUGGcUGGa -3'
miRNA:   3'- -GCACG------ACGCGUUG---UCUGGCGUCcACU- -5'
19314 5' -56.4 NC_004685.1 + 21358 0.66 0.679825
Target:  5'- aCGUgGCgucgGCGaucuGGCAGGCgGCGGGUGc -3'
miRNA:   3'- -GCA-CGa---CGCg---UUGUCUGgCGUCCACu -5'
19314 5' -56.4 NC_004685.1 + 11113 0.67 0.669086
Target:  5'- uCGUGCUugGCGCGAUAGGuucaaCGCccGGUGGc -3'
miRNA:   3'- -GCACGA--CGCGUUGUCUg----GCGu-CCACU- -5'
19314 5' -56.4 NC_004685.1 + 57630 0.67 0.63779
Target:  5'- --aGCUGCuuGCcgucgaccacuacauACGGGCUGCGGGUGAc -3'
miRNA:   3'- gcaCGACG--CGu--------------UGUCUGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 67923 0.67 0.625896
Target:  5'- aCGUGCgcgaacGCGCGgggcggggaugACAGgcGCCGC-GGUGAa -3'
miRNA:   3'- -GCACGa-----CGCGU-----------UGUC--UGGCGuCCACU- -5'
19314 5' -56.4 NC_004685.1 + 61861 0.67 0.625896
Target:  5'- uCG-GCUGUaGCAGCGGACCGCAc---- -3'
miRNA:   3'- -GCaCGACG-CGUUGUCUGGCGUccacu -5'
19314 5' -56.4 NC_004685.1 + 47359 0.67 0.625896
Target:  5'- --cGCgaGCGCAcGCAGACCG-AGGUGc -3'
miRNA:   3'- gcaCGa-CGCGU-UGUCUGGCgUCCACu -5'
19314 5' -56.4 NC_004685.1 + 188 0.67 0.612928
Target:  5'- gCGUGCgcgcggguuucgGCGCGACgAGugCGCGcuGGUGu -3'
miRNA:   3'- -GCACGa-----------CGCGUUG-UCugGCGU--CCACu -5'
19314 5' -56.4 NC_004685.1 + 14825 0.68 0.604294
Target:  5'- gCGgcgGCUGCGCAGCu-GCCGgAGGg-- -3'
miRNA:   3'- -GCa--CGACGCGUUGucUGGCgUCCacu -5'
19314 5' -56.4 NC_004685.1 + 3692 0.68 0.604294
Target:  5'- gGUGUgggugGCGCAGCGuuuGACC-CGGGUGc -3'
miRNA:   3'- gCACGa----CGCGUUGU---CUGGcGUCCACu -5'
19314 5' -56.4 NC_004685.1 + 9273 0.68 0.593524
Target:  5'- gCGUGaUGCGuCAACAG-CUGCAGGg-- -3'
miRNA:   3'- -GCACgACGC-GUUGUCuGGCGUCCacu -5'
19314 5' -56.4 NC_004685.1 + 4588 0.68 0.593524
Target:  5'- --cGC-GCGCugauGCAGGCCGU-GGUGAa -3'
miRNA:   3'- gcaCGaCGCGu---UGUCUGGCGuCCACU- -5'
19314 5' -56.4 NC_004685.1 + 66167 0.68 0.582785
Target:  5'- gCGUGCUGCuugGCGugAuGGCCGCAGa--- -3'
miRNA:   3'- -GCACGACG---CGUugU-CUGGCGUCcacu -5'
19314 5' -56.4 NC_004685.1 + 2859 0.68 0.572085
Target:  5'- aCGUGCaggGCGUGaccGCGGGCUGCuacggcccgacGGGUGAc -3'
miRNA:   3'- -GCACGa--CGCGU---UGUCUGGCG-----------UCCACU- -5'
19314 5' -56.4 NC_004685.1 + 21625 0.69 0.519444
Target:  5'- aGUGCUucgaGCAGCGGGucggcaccCUGCAGGUGGu -3'
miRNA:   3'- gCACGAcg--CGUUGUCU--------GGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 28770 0.69 0.519444
Target:  5'- --aGCUGCGcCAGCAGGCCG-AGcGUGu -3'
miRNA:   3'- gcaCGACGC-GUUGUCUGGCgUC-CACu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.