Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
19314 | 5' | -56.4 | NC_004685.1 | + | 44156 | 1.09 | 0.000927 |
Target: 5'- cCGUGCUGCGCAACAGACCGCAGGUGAa -3' miRNA: 3'- -GCACGACGCGUUGUCUGGCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 26339 | 0.8 | 0.118046 |
Target: 5'- -cUGCUGCGCGAU--GCCGUAGGUGAu -3' miRNA: 3'- gcACGACGCGUUGucUGGCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 4482 | 0.78 | 0.142996 |
Target: 5'- gGUGCaUGCGCuGGCGGGgcauuCCGCAGGUGAu -3' miRNA: 3'- gCACG-ACGCG-UUGUCU-----GGCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 59572 | 0.73 | 0.318756 |
Target: 5'- -aUGUUGCGCAGgcGGCgGCGGGUGAg -3' miRNA: 3'- gcACGACGCGUUguCUGgCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 31863 | 0.72 | 0.37595 |
Target: 5'- --aGCaGuCGCAGCAG-CCGCAGGUGc -3' miRNA: 3'- gcaCGaC-GCGUUGUCuGGCGUCCACu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 33810 | 0.72 | 0.358922 |
Target: 5'- gGUGCUGCGCGGCucccaGGGCCuGUccgAGGUGu -3' miRNA: 3'- gCACGACGCGUUG-----UCUGG-CG---UCCACu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 18565 | 0.72 | 0.350612 |
Target: 5'- uCG-GC-GgGCAACAGGCCGguGGUGu -3' miRNA: 3'- -GCaCGaCgCGUUGUCUGGCguCCACu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 40867 | 0.71 | 0.411605 |
Target: 5'- gGUGCUGgCGUcGCGGGCCGCGcGGg-- -3' miRNA: 3'- gCACGAC-GCGuUGUCUGGCGU-CCacu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 33106 | 0.71 | 0.402496 |
Target: 5'- -uUGgUGCGCGACuGGAUCGCGGcGUGGg -3' miRNA: 3'- gcACgACGCGUUG-UCUGGCGUC-CACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 12313 | 0.7 | 0.468817 |
Target: 5'- --cGCUGCGCAGCuGGC-GuCGGGUGGu -3' miRNA: 3'- gcaCGACGCGUUGuCUGgC-GUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 22835 | 0.7 | 0.488781 |
Target: 5'- --aGCUGgGCAcCuauCCGCAGGUGAa -3' miRNA: 3'- gcaCGACgCGUuGucuGGCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 29197 | 0.7 | 0.478748 |
Target: 5'- cCG-GCcGCGCAACAGGCCGC-GcUGAu -3' miRNA: 3'- -GCaCGaCGCGUUGUCUGGCGuCcACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 987 | 0.7 | 0.468817 |
Target: 5'- uCGUGg-GUGCAGCGGAUCGguGGUu- -3' miRNA: 3'- -GCACgaCGCGUUGUCUGGCguCCAcu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 25538 | 0.7 | 0.44928 |
Target: 5'- -cUGUUGCGCAgcacggugaucGCGGACUGCAgcgcGGUGGu -3' miRNA: 3'- gcACGACGCGU-----------UGUCUGGCGU----CCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 8841 | 0.7 | 0.439681 |
Target: 5'- ----aUGUGCGGCAGgcggucACCGCGGGUGAc -3' miRNA: 3'- gcacgACGCGUUGUC------UGGCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 54963 | 0.69 | 0.498911 |
Target: 5'- aGUGCcggcuccaGCGC-ACGGGCCGCGccguuGGUGAu -3' miRNA: 3'- gCACGa-------CGCGuUGUCUGGCGU-----CCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 28770 | 0.69 | 0.519444 |
Target: 5'- --aGCUGCGcCAGCAGGCCG-AGcGUGu -3' miRNA: 3'- gcaCGACGC-GUUGUCUGGCgUC-CACu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 21625 | 0.69 | 0.519444 |
Target: 5'- aGUGCUucgaGCAGCGGGucggcaccCUGCAGGUGGu -3' miRNA: 3'- gCACGAcg--CGUUGUCU--------GGCGUCCACU- -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 3692 | 0.68 | 0.604294 |
Target: 5'- gGUGUgggugGCGCAGCGuuuGACC-CGGGUGc -3' miRNA: 3'- gCACGa----CGCGUUGU---CUGGcGUCCACu -5' |
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19314 | 5' | -56.4 | NC_004685.1 | + | 66167 | 0.68 | 0.582785 |
Target: 5'- gCGUGCUGCuugGCGugAuGGCCGCAGa--- -3' miRNA: 3'- -GCACGACG---CGUugU-CUGGCGUCcacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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