miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19314 5' -56.4 NC_004685.1 + 44156 1.09 0.000927
Target:  5'- cCGUGCUGCGCAACAGACCGCAGGUGAa -3'
miRNA:   3'- -GCACGACGCGUUGUCUGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 26339 0.8 0.118046
Target:  5'- -cUGCUGCGCGAU--GCCGUAGGUGAu -3'
miRNA:   3'- gcACGACGCGUUGucUGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 4482 0.78 0.142996
Target:  5'- gGUGCaUGCGCuGGCGGGgcauuCCGCAGGUGAu -3'
miRNA:   3'- gCACG-ACGCG-UUGUCU-----GGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 59572 0.73 0.318756
Target:  5'- -aUGUUGCGCAGgcGGCgGCGGGUGAg -3'
miRNA:   3'- gcACGACGCGUUguCUGgCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 18565 0.72 0.350612
Target:  5'- uCG-GC-GgGCAACAGGCCGguGGUGu -3'
miRNA:   3'- -GCaCGaCgCGUUGUCUGGCguCCACu -5'
19314 5' -56.4 NC_004685.1 + 33810 0.72 0.358922
Target:  5'- gGUGCUGCGCGGCucccaGGGCCuGUccgAGGUGu -3'
miRNA:   3'- gCACGACGCGUUG-----UCUGG-CG---UCCACu -5'
19314 5' -56.4 NC_004685.1 + 31863 0.72 0.37595
Target:  5'- --aGCaGuCGCAGCAG-CCGCAGGUGc -3'
miRNA:   3'- gcaCGaC-GCGUUGUCuGGCGUCCACu -5'
19314 5' -56.4 NC_004685.1 + 33106 0.71 0.402496
Target:  5'- -uUGgUGCGCGACuGGAUCGCGGcGUGGg -3'
miRNA:   3'- gcACgACGCGUUG-UCUGGCGUC-CACU- -5'
19314 5' -56.4 NC_004685.1 + 40867 0.71 0.411605
Target:  5'- gGUGCUGgCGUcGCGGGCCGCGcGGg-- -3'
miRNA:   3'- gCACGAC-GCGuUGUCUGGCGU-CCacu -5'
19314 5' -56.4 NC_004685.1 + 8841 0.7 0.439681
Target:  5'- ----aUGUGCGGCAGgcggucACCGCGGGUGAc -3'
miRNA:   3'- gcacgACGCGUUGUC------UGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 25538 0.7 0.44928
Target:  5'- -cUGUUGCGCAgcacggugaucGCGGACUGCAgcgcGGUGGu -3'
miRNA:   3'- gcACGACGCGU-----------UGUCUGGCGU----CCACU- -5'
19314 5' -56.4 NC_004685.1 + 12313 0.7 0.468817
Target:  5'- --cGCUGCGCAGCuGGC-GuCGGGUGGu -3'
miRNA:   3'- gcaCGACGCGUUGuCUGgC-GUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 987 0.7 0.468817
Target:  5'- uCGUGg-GUGCAGCGGAUCGguGGUu- -3'
miRNA:   3'- -GCACgaCGCGUUGUCUGGCguCCAcu -5'
19314 5' -56.4 NC_004685.1 + 29197 0.7 0.478748
Target:  5'- cCG-GCcGCGCAACAGGCCGC-GcUGAu -3'
miRNA:   3'- -GCaCGaCGCGUUGUCUGGCGuCcACU- -5'
19314 5' -56.4 NC_004685.1 + 22835 0.7 0.488781
Target:  5'- --aGCUGgGCAcCuauCCGCAGGUGAa -3'
miRNA:   3'- gcaCGACgCGUuGucuGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 54963 0.69 0.498911
Target:  5'- aGUGCcggcuccaGCGC-ACGGGCCGCGccguuGGUGAu -3'
miRNA:   3'- gCACGa-------CGCGuUGUCUGGCGU-----CCACU- -5'
19314 5' -56.4 NC_004685.1 + 28770 0.69 0.519444
Target:  5'- --aGCUGCGcCAGCAGGCCG-AGcGUGu -3'
miRNA:   3'- gcaCGACGC-GUUGUCUGGCgUC-CACu -5'
19314 5' -56.4 NC_004685.1 + 21625 0.69 0.519444
Target:  5'- aGUGCUucgaGCAGCGGGucggcaccCUGCAGGUGGu -3'
miRNA:   3'- gCACGAcg--CGUUGUCU--------GGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 2859 0.68 0.572085
Target:  5'- aCGUGCaggGCGUGaccGCGGGCUGCuacggcccgacGGGUGAc -3'
miRNA:   3'- -GCACGa--CGCGU---UGUCUGGCG-----------UCCACU- -5'
19314 5' -56.4 NC_004685.1 + 66167 0.68 0.582785
Target:  5'- gCGUGCUGCuugGCGugAuGGCCGCAGa--- -3'
miRNA:   3'- -GCACGACG---CGUugU-CUGGCGUCcacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.