miRNA display CGI


Results 21 - 36 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19314 5' -56.4 NC_004685.1 + 29197 0.7 0.478748
Target:  5'- cCG-GCcGCGCAACAGGCCGC-GcUGAu -3'
miRNA:   3'- -GCaCGaCGCGUUGUCUGGCGuCcACU- -5'
19314 5' -56.4 NC_004685.1 + 31863 0.72 0.37595
Target:  5'- --aGCaGuCGCAGCAG-CCGCAGGUGc -3'
miRNA:   3'- gcaCGaC-GCGUUGUCuGGCGUCCACu -5'
19314 5' -56.4 NC_004685.1 + 33106 0.71 0.402496
Target:  5'- -uUGgUGCGCGACuGGAUCGCGGcGUGGg -3'
miRNA:   3'- gcACgACGCGUUG-UCUGGCGUC-CACU- -5'
19314 5' -56.4 NC_004685.1 + 33810 0.72 0.358922
Target:  5'- gGUGCUGCGCGGCucccaGGGCCuGUccgAGGUGu -3'
miRNA:   3'- gCACGACGCGUUG-----UCUGG-CG---UCCACu -5'
19314 5' -56.4 NC_004685.1 + 34442 0.66 0.722236
Target:  5'- gCGUGUUGUgGCcGCGGGCaccccguugCGUAGGUGGc -3'
miRNA:   3'- -GCACGACG-CGuUGUCUG---------GCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 38000 0.66 0.711736
Target:  5'- gGUGgUGaCGCAggGCGcGACCGCGGGc-- -3'
miRNA:   3'- gCACgAC-GCGU--UGU-CUGGCGUCCacu -5'
19314 5' -56.4 NC_004685.1 + 40867 0.71 0.411605
Target:  5'- gGUGCUGgCGUcGCGGGCCGCGcGGg-- -3'
miRNA:   3'- gCACGAC-GCGuUGUCUGGCGU-CCacu -5'
19314 5' -56.4 NC_004685.1 + 40926 0.66 0.711736
Target:  5'- -cUGCUgGCGCAGCugauccugggAGACCG-AGGUGu -3'
miRNA:   3'- gcACGA-CGCGUUG----------UCUGGCgUCCACu -5'
19314 5' -56.4 NC_004685.1 + 44156 1.09 0.000927
Target:  5'- cCGUGCUGCGCAACAGACCGCAGGUGAa -3'
miRNA:   3'- -GCACGACGCGUUGUCUGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 47359 0.67 0.625896
Target:  5'- --cGCgaGCGCAcGCAGACCG-AGGUGc -3'
miRNA:   3'- gcaCGa-CGCGU-UGUCUGGCgUCCACu -5'
19314 5' -56.4 NC_004685.1 + 54963 0.69 0.498911
Target:  5'- aGUGCcggcuccaGCGC-ACGGGCCGCGccguuGGUGAu -3'
miRNA:   3'- gCACGa-------CGCGuUGUCUGGCGU-----CCACU- -5'
19314 5' -56.4 NC_004685.1 + 57630 0.67 0.63779
Target:  5'- --aGCUGCuuGCcgucgaccacuacauACGGGCUGCGGGUGAc -3'
miRNA:   3'- gcaCGACG--CGu--------------UGUCUGGCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 59572 0.73 0.318756
Target:  5'- -aUGUUGCGCAGgcGGCgGCGGGUGAg -3'
miRNA:   3'- gcACGACGCGUUguCUGgCGUCCACU- -5'
19314 5' -56.4 NC_004685.1 + 61861 0.67 0.625896
Target:  5'- uCG-GCUGUaGCAGCGGACCGCAc---- -3'
miRNA:   3'- -GCaCGACG-CGUUGUCUGGCGUccacu -5'
19314 5' -56.4 NC_004685.1 + 66167 0.68 0.582785
Target:  5'- gCGUGCUGCuugGCGugAuGGCCGCAGa--- -3'
miRNA:   3'- -GCACGACG---CGUugU-CUGGCGUCcacu -5'
19314 5' -56.4 NC_004685.1 + 67923 0.67 0.625896
Target:  5'- aCGUGCgcgaacGCGCGgggcggggaugACAGgcGCCGC-GGUGAa -3'
miRNA:   3'- -GCACGa-----CGCGU-----------UGUC--UGGCGuCCACU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.