miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19321 3' -52.3 NC_004685.1 + 30167 0.66 0.908812
Target:  5'- --aGGUaUCGCGGGACCGgcuaUCGcUGc -3'
miRNA:   3'- guaCCAaAGCGCCUUGGCg---AGCuACa -5'
19321 3' -52.3 NC_004685.1 + 20664 0.66 0.908812
Target:  5'- gAUGG--UCGCGGAguGCCGCggcCGcAUGg -3'
miRNA:   3'- gUACCaaAGCGCCU--UGGCGa--GC-UACa -5'
19321 3' -52.3 NC_004685.1 + 50885 0.66 0.895149
Target:  5'- --cGGUUgcgCGCGGuGCCGCgCGGUc- -3'
miRNA:   3'- guaCCAAa--GCGCCuUGGCGaGCUAca -5'
19321 3' -52.3 NC_004685.1 + 18324 0.66 0.887914
Target:  5'- gGUGGcccugUCGCgcaGGGAuCUGCUCGAUGc -3'
miRNA:   3'- gUACCaa---AGCG---CCUU-GGCGAGCUACa -5'
19321 3' -52.3 NC_004685.1 + 153 0.66 0.887914
Target:  5'- gGUGGc--CGgGGAGCUGCUCGGc-- -3'
miRNA:   3'- gUACCaaaGCgCCUUGGCGAGCUaca -5'
19321 3' -52.3 NC_004685.1 + 11407 0.67 0.880416
Target:  5'- gCcgGGUUUCgGCGGuGGCCGC-CGcUGUg -3'
miRNA:   3'- -GuaCCAAAG-CGCC-UUGGCGaGCuACA- -5'
19321 3' -52.3 NC_004685.1 + 54036 0.67 0.880416
Target:  5'- --aGGUgugCGgGGAuGCCGCgggCGAUGg -3'
miRNA:   3'- guaCCAaa-GCgCCU-UGGCGa--GCUACa -5'
19321 3' -52.3 NC_004685.1 + 30704 0.67 0.880416
Target:  5'- --cGGggUCGCGGuacgcGCCGCcgucgcCGAUGUc -3'
miRNA:   3'- guaCCaaAGCGCCu----UGGCGa-----GCUACA- -5'
19321 3' -52.3 NC_004685.1 + 58131 0.67 0.87266
Target:  5'- -cUGGUaggCGCGGuuGCCGgCUUGAUGc -3'
miRNA:   3'- guACCAaa-GCGCCu-UGGC-GAGCUACa -5'
19321 3' -52.3 NC_004685.1 + 68360 0.67 0.864654
Target:  5'- --gGGcUUCGCGGAcgcACCGC-CGAcGUg -3'
miRNA:   3'- guaCCaAAGCGCCU---UGGCGaGCUaCA- -5'
19321 3' -52.3 NC_004685.1 + 37211 0.67 0.856403
Target:  5'- --aGGUUgggcagCGcCGGGGCCGCgcCGAUGa -3'
miRNA:   3'- guaCCAAa-----GC-GCCUUGGCGa-GCUACa -5'
19321 3' -52.3 NC_004685.1 + 35372 0.68 0.8392
Target:  5'- aCGUGGUgacCGUcaaGGACCGCUCGcgGa -3'
miRNA:   3'- -GUACCAaa-GCGc--CUUGGCGAGCuaCa -5'
19321 3' -52.3 NC_004685.1 + 18487 0.68 0.802241
Target:  5'- -cUGGUggUGCGGAugCGgUCGAaGUa -3'
miRNA:   3'- guACCAaaGCGCCUugGCgAGCUaCA- -5'
19321 3' -52.3 NC_004685.1 + 41206 0.72 0.62192
Target:  5'- -cUGGUgUCGCGGAgaacccGCUGCUCuguGAUGUa -3'
miRNA:   3'- guACCAaAGCGCCU------UGGCGAG---CUACA- -5'
19321 3' -52.3 NC_004685.1 + 15074 0.73 0.513396
Target:  5'- --aGGUggcCGgGGAGCUGCUCGGUGc -3'
miRNA:   3'- guaCCAaa-GCgCCUUGGCGAGCUACa -5'
19321 3' -52.3 NC_004685.1 + 39957 1.07 0.003532
Target:  5'- aCAUGGUUUCGCGGAACCGCUCGAUGUc -3'
miRNA:   3'- -GUACCAAAGCGCCUUGGCGAGCUACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.