miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19321 5' -50.7 NC_004685.1 + 58486 0.66 0.960212
Target:  5'- gUCGG--CGAACGCGUUGaACAucGCAUCg -3'
miRNA:   3'- -AGUCugGCUUGUGCAGCaUGU--CGUAG- -5'
19321 5' -50.7 NC_004685.1 + 1036 0.66 0.960212
Target:  5'- aCAGcCCGAGCACcaGUCGgugUugAGCcgCg -3'
miRNA:   3'- aGUCuGGCUUGUG--CAGC---AugUCGuaG- -5'
19321 5' -50.7 NC_004685.1 + 6752 0.66 0.960212
Target:  5'- aUCGG-CCGGGCAUGUCGccgucgaAGCAcuUCg -3'
miRNA:   3'- -AGUCuGGCUUGUGCAGCaug----UCGU--AG- -5'
19321 5' -50.7 NC_004685.1 + 35329 0.66 0.960212
Target:  5'- -uGGACCaaGAACuucGCGUCGaUGCGGC-UCa -3'
miRNA:   3'- agUCUGG--CUUG---UGCAGC-AUGUCGuAG- -5'
19321 5' -50.7 NC_004685.1 + 26664 0.66 0.960212
Target:  5'- aCAG-CCGAGCGCG-CGcauCAGC-UCa -3'
miRNA:   3'- aGUCuGGCUUGUGCaGCau-GUCGuAG- -5'
19321 5' -50.7 NC_004685.1 + 24918 0.66 0.960212
Target:  5'- gCAGGCCc-GCGCGgUGU-CGGCGUCg -3'
miRNA:   3'- aGUCUGGcuUGUGCaGCAuGUCGUAG- -5'
19321 5' -50.7 NC_004685.1 + 47370 0.66 0.956187
Target:  5'- gCAGACCGAGgugcugcgUACGcUCGUGCGGg--- -3'
miRNA:   3'- aGUCUGGCUU--------GUGC-AGCAUGUCguag -5'
19321 5' -50.7 NC_004685.1 + 9848 0.66 0.956187
Target:  5'- ---cGCUGAuCGCGUCGgUGCAGcCGUCa -3'
miRNA:   3'- agucUGGCUuGUGCAGC-AUGUC-GUAG- -5'
19321 5' -50.7 NC_004685.1 + 36737 0.66 0.956187
Target:  5'- aUCAGACCGGACAgGcUC-UugAGCu-- -3'
miRNA:   3'- -AGUCUGGCUUGUgC-AGcAugUCGuag -5'
19321 5' -50.7 NC_004685.1 + 61002 0.66 0.95535
Target:  5'- gCAGGCCGugccggcgaugcACAuCGUCGUGCcGCAcUCa -3'
miRNA:   3'- aGUCUGGCu-----------UGU-GCAGCAUGuCGU-AG- -5'
19321 5' -50.7 NC_004685.1 + 47973 0.66 0.951894
Target:  5'- gCGGaACCGAACc---CGUGCAGCGUg -3'
miRNA:   3'- aGUC-UGGCUUGugcaGCAUGUCGUAg -5'
19321 5' -50.7 NC_004685.1 + 17702 0.66 0.951894
Target:  5'- aUCAGGgUGAccgcccugguugGCGCGUUGgUGCuGCGUCg -3'
miRNA:   3'- -AGUCUgGCU------------UGUGCAGC-AUGuCGUAG- -5'
19321 5' -50.7 NC_004685.1 + 35368 0.66 0.951894
Target:  5'- gCAGGCUGuACAUGUUGcccUGCGGCGg- -3'
miRNA:   3'- aGUCUGGCuUGUGCAGC---AUGUCGUag -5'
19321 5' -50.7 NC_004685.1 + 38742 0.66 0.951894
Target:  5'- cUCAGcCUGAAUgACGUCGUAC-GCcgCc -3'
miRNA:   3'- -AGUCuGGCUUG-UGCAGCAUGuCGuaG- -5'
19321 5' -50.7 NC_004685.1 + 51760 0.66 0.951894
Target:  5'- cCAGAUCGGAuacucCACGUUG-GCGGCAc- -3'
miRNA:   3'- aGUCUGGCUU-----GUGCAGCaUGUCGUag -5'
19321 5' -50.7 NC_004685.1 + 1262 0.66 0.947327
Target:  5'- aUCGGACCuacGCGCGcgCGUGgcGCAUCg -3'
miRNA:   3'- -AGUCUGGcu-UGUGCa-GCAUguCGUAG- -5'
19321 5' -50.7 NC_004685.1 + 27323 0.66 0.947327
Target:  5'- -uGGACUGGcggcaagggugGCACGgcgaagcaugUGUACGGCAUCu -3'
miRNA:   3'- agUCUGGCU-----------UGUGCa---------GCAUGUCGUAG- -5'
19321 5' -50.7 NC_004685.1 + 9432 0.66 0.942483
Target:  5'- gCGGGCCGAccgGCGcCGUACGGggaGUCa -3'
miRNA:   3'- aGUCUGGCUug-UGCaGCAUGUCg--UAG- -5'
19321 5' -50.7 NC_004685.1 + 19178 0.67 0.937359
Target:  5'- --cGACCGGuACAUGUCGggGCA-CAUCg -3'
miRNA:   3'- aguCUGGCU-UGUGCAGCa-UGUcGUAG- -5'
19321 5' -50.7 NC_004685.1 + 31001 0.67 0.937359
Target:  5'- -gAGGCCGAACGCGgcgaGUucgaGGCGUUc -3'
miRNA:   3'- agUCUGGCUUGUGCag--CAug--UCGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.