miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19322 3' -55.9 NC_004685.1 + 53027 0.66 0.732345
Target:  5'- gCAGGC-GCGgGUCGAUgUCGUCCu- -3'
miRNA:   3'- aGUCCGaCGCgUAGCUGaGGUAGGuc -5'
19322 3' -55.9 NC_004685.1 + 25453 0.66 0.711335
Target:  5'- cCGGGCUGCuGCggCG-CUUCA-CCGGg -3'
miRNA:   3'- aGUCCGACG-CGuaGCuGAGGUaGGUC- -5'
19322 3' -55.9 NC_004685.1 + 52510 0.66 0.700711
Target:  5'- aUCAGGCgcaGCGCcgCGGCgaacgCCGacgCCAu -3'
miRNA:   3'- -AGUCCGa--CGCGuaGCUGa----GGUa--GGUc -5'
19322 3' -55.9 NC_004685.1 + 30486 0.66 0.700711
Target:  5'- cCAGGCgGCGCGUgGAg-CguUCCGGg -3'
miRNA:   3'- aGUCCGaCGCGUAgCUgaGguAGGUC- -5'
19322 3' -55.9 NC_004685.1 + 33805 0.67 0.679279
Target:  5'- uUCAGGgUGCuGCG-CGGCUCCcagggccuGUCCGa -3'
miRNA:   3'- -AGUCCgACG-CGUaGCUGAGG--------UAGGUc -5'
19322 3' -55.9 NC_004685.1 + 53317 0.67 0.679279
Target:  5'- aUCAGGCUgagguccuggGCGCucAUCGACUUCG-CCuGg -3'
miRNA:   3'- -AGUCCGA----------CGCG--UAGCUGAGGUaGGuC- -5'
19322 3' -55.9 NC_004685.1 + 39406 0.67 0.668493
Target:  5'- cCAGGUUGuCGUagGUCGGCgCCGcgCCAGg -3'
miRNA:   3'- aGUCCGAC-GCG--UAGCUGaGGUa-GGUC- -5'
19322 3' -55.9 NC_004685.1 + 28672 0.68 0.614261
Target:  5'- gCGGGCguucgauCGCGUCGGCgacgCCA-CCAGg -3'
miRNA:   3'- aGUCCGac-----GCGUAGCUGa---GGUaGGUC- -5'
19322 3' -55.9 NC_004685.1 + 52796 0.68 0.58937
Target:  5'- -gAGGaUGCGCGUCGACUcacccuugccgacgCCGaacUCCAGg -3'
miRNA:   3'- agUCCgACGCGUAGCUGA--------------GGU---AGGUC- -5'
19322 3' -55.9 NC_004685.1 + 7690 0.69 0.560393
Target:  5'- uUCAGGCUGCGCguguuGUCGAacgaaCCAaCCGa -3'
miRNA:   3'- -AGUCCGACGCG-----UAGCUga---GGUaGGUc -5'
19322 3' -55.9 NC_004685.1 + 45821 0.69 0.52868
Target:  5'- --uGGCgcaGCGCAUCGGCaCCGUCguGg -3'
miRNA:   3'- aguCCGa--CGCGUAGCUGaGGUAGguC- -5'
19322 3' -55.9 NC_004685.1 + 49344 0.69 0.518253
Target:  5'- gCGGGCaGCGguUCGcCgccgCCGUCCGGc -3'
miRNA:   3'- aGUCCGaCGCguAGCuGa---GGUAGGUC- -5'
19322 3' -55.9 NC_004685.1 + 61858 0.7 0.487492
Target:  5'- cUCGcGCUGCGCAgCGAUgacaCAUCCAGu -3'
miRNA:   3'- -AGUcCGACGCGUaGCUGag--GUAGGUC- -5'
19322 3' -55.9 NC_004685.1 + 24325 0.7 0.46747
Target:  5'- gCAGGCggguucgGCGaCGUCGACUCCcgCUu- -3'
miRNA:   3'- aGUCCGa------CGC-GUAGCUGAGGuaGGuc -5'
19322 3' -55.9 NC_004685.1 + 33974 0.71 0.457619
Target:  5'- aUCAGGaucgagaGCGCGUCGA--UCAUCCAGg -3'
miRNA:   3'- -AGUCCga-----CGCGUAGCUgaGGUAGGUC- -5'
19322 3' -55.9 NC_004685.1 + 66589 0.71 0.457619
Target:  5'- cUCGGGUUGCGCcacgCGACg--GUCCAGa -3'
miRNA:   3'- -AGUCCGACGCGua--GCUGaggUAGGUC- -5'
19322 3' -55.9 NC_004685.1 + 13870 0.72 0.369228
Target:  5'- uUCGGGCUGUGUGUCGAgUaccccggugugcuggCCAUCUGGa -3'
miRNA:   3'- -AGUCCGACGCGUAGCUgA---------------GGUAGGUC- -5'
19322 3' -55.9 NC_004685.1 + 38710 1.1 0.000924
Target:  5'- uUCAGGCUGCGCAUCGACUCCAUCCAGg -3'
miRNA:   3'- -AGUCCGACGCGUAGCUGAGGUAGGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.