miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19323 3' -59 NC_004685.1 + 64043 0.66 0.628183
Target:  5'- cUGACUGCagccaGGUGUgcaucgCGGUACCGaugaucgaGGCGa -3'
miRNA:   3'- cAUUGGCGg----CCACA------GCCAUGGC--------CCGC- -5'
19323 3' -59 NC_004685.1 + 31168 0.66 0.628183
Target:  5'- --cGCCGCCGc-GcCGGUcCUGGGCGc -3'
miRNA:   3'- cauUGGCGGCcaCaGCCAuGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 6744 0.66 0.628183
Target:  5'- ---cCCGCCGGa-UCGG--CCGGGCa -3'
miRNA:   3'- cauuGGCGGCCacAGCCauGGCCCGc -5'
19323 3' -59 NC_004685.1 + 38986 0.66 0.627136
Target:  5'- --cGCCGCCgaacgcgccgauaGGaaucuUGUCcagcucgaaGGUGCCGGGCGu -3'
miRNA:   3'- cauUGGCGG-------------CC-----ACAG---------CCAUGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 53638 0.66 0.617716
Target:  5'- -aGGCCGCCGaUG-CGGUAUuCGcGGCGc -3'
miRNA:   3'- caUUGGCGGCcACaGCCAUG-GC-CCGC- -5'
19323 3' -59 NC_004685.1 + 65439 0.66 0.608304
Target:  5'- cUGACCGCgCGGUGgagaagcuggccgaaCGcGUcGCCGGGUGc -3'
miRNA:   3'- cAUUGGCG-GCCACa--------------GC-CA-UGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 18032 0.66 0.607259
Target:  5'- aGgcGCUGCCgcaguucaugguGGUGUCGuucgacGCCGGGCa -3'
miRNA:   3'- -CauUGGCGG------------CCACAGCca----UGGCCCGc -5'
19323 3' -59 NC_004685.1 + 16282 0.66 0.607259
Target:  5'- -gGACCGCUGGaucgaGUCGcgcuccaaGUacGCCGGGCa -3'
miRNA:   3'- caUUGGCGGCCa----CAGC--------CA--UGGCCCGc -5'
19323 3' -59 NC_004685.1 + 37549 0.66 0.607259
Target:  5'- -cGGCaCGCCcagcGGUGUCGGUGcgccacCCGGuGUGa -3'
miRNA:   3'- caUUG-GCGG----CCACAGCCAU------GGCC-CGC- -5'
19323 3' -59 NC_004685.1 + 11466 0.66 0.600994
Target:  5'- -aAACCGCCGGUcaccccuuugagugcGUgcaUGGcgcACCGGGUGa -3'
miRNA:   3'- caUUGGCGGCCA---------------CA---GCCa--UGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 45680 0.66 0.596823
Target:  5'- -cGACaGCUGGagGUCGG-GCUGGGCa -3'
miRNA:   3'- caUUGgCGGCCa-CAGCCaUGGCCCGc -5'
19323 3' -59 NC_004685.1 + 37613 0.66 0.593696
Target:  5'- uGUGGCCGCuCGGcGcguuccccagcgauUCGGU-CgCGGGCGg -3'
miRNA:   3'- -CAUUGGCG-GCCaC--------------AGCCAuG-GCCCGC- -5'
19323 3' -59 NC_004685.1 + 57964 0.66 0.576038
Target:  5'- -gGGCCGUgcgCGGUGUCaGcgcacaGCCGGGUGa -3'
miRNA:   3'- caUUGGCG---GCCACAGcCa-----UGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 2759 0.66 0.576038
Target:  5'- ---cUCGUCGGgcaCGGUGCCGcGGCGc -3'
miRNA:   3'- cauuGGCGGCCacaGCCAUGGC-CCGC- -5'
19323 3' -59 NC_004685.1 + 30777 0.67 0.565704
Target:  5'- gGUGACU-CCGGcuUCGGcaaGCCGGGCGc -3'
miRNA:   3'- -CAUUGGcGGCCacAGCCa--UGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 43048 0.67 0.562614
Target:  5'- uGUGcUCGUCGGUGcggCGGUgcucgccgcggucgGCUGGGCGc -3'
miRNA:   3'- -CAUuGGCGGCCACa--GCCA--------------UGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 25969 0.67 0.55542
Target:  5'- --uGCCGCCGacaccaUCGGUcuuccaGCCGGGCa -3'
miRNA:   3'- cauUGGCGGCcac---AGCCA------UGGCCCGc -5'
19323 3' -59 NC_004685.1 + 12635 0.67 0.545191
Target:  5'- -aAAUCGaCCGGcUGcUCGccGCCGGGCGg -3'
miRNA:   3'- caUUGGC-GGCC-AC-AGCcaUGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 38842 0.67 0.535023
Target:  5'- -cGGCUGCCGcGccgGUCGGUGCCcGcGGUGc -3'
miRNA:   3'- caUUGGCGGC-Ca--CAGCCAUGG-C-CCGC- -5'
19323 3' -59 NC_004685.1 + 5168 0.67 0.53401
Target:  5'- aUGACCGCCGcGgcuggauUGUCGG--CUGGGUGg -3'
miRNA:   3'- cAUUGGCGGC-C-------ACAGCCauGGCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.