miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19323 3' -59 NC_004685.1 + 9708 0.67 0.524923
Target:  5'- -cGACaCGCUGGgcgCGGUgaccggccguGCCGGGCa -3'
miRNA:   3'- caUUG-GCGGCCacaGCCA----------UGGCCCGc -5'
19323 3' -59 NC_004685.1 + 8094 0.67 0.523916
Target:  5'- cUGAUgGCCGG-GUCGGUggucaacgcgcugGCCGaGGCc -3'
miRNA:   3'- cAUUGgCGGCCaCAGCCA-------------UGGC-CCGc -5'
19323 3' -59 NC_004685.1 + 12606 0.67 0.514896
Target:  5'- --cGCCGCCgaGGUG-CGcaagGCCGGGCa -3'
miRNA:   3'- cauUGGCGG--CCACaGCca--UGGCCCGc -5'
19323 3' -59 NC_004685.1 + 22859 0.67 0.514896
Target:  5'- -aGACCGa-GGUGUCGGcGCCcGGCu -3'
miRNA:   3'- caUUGGCggCCACAGCCaUGGcCCGc -5'
19323 3' -59 NC_004685.1 + 45957 0.68 0.504947
Target:  5'- ----aCGCUGGUGgagcaGGUGCgCGGGCu -3'
miRNA:   3'- cauugGCGGCCACag---CCAUG-GCCCGc -5'
19323 3' -59 NC_004685.1 + 48370 0.68 0.495083
Target:  5'- cGUAGCCgacagcGCCGGUGgaGGUGCUGG-CGa -3'
miRNA:   3'- -CAUUGG------CGGCCACagCCAUGGCCcGC- -5'
19323 3' -59 NC_004685.1 + 14728 0.68 0.495083
Target:  5'- gGUGACCGa-GGUGUCGGUGU-GGGUGc -3'
miRNA:   3'- -CAUUGGCggCCACAGCCAUGgCCCGC- -5'
19323 3' -59 NC_004685.1 + 29851 0.68 0.485306
Target:  5'- aUGGCCGCCGuGaUGUCGG--CCGGcaGCGg -3'
miRNA:   3'- cAUUGGCGGC-C-ACAGCCauGGCC--CGC- -5'
19323 3' -59 NC_004685.1 + 41437 0.68 0.475623
Target:  5'- --cGCUGCCGGuUGaCGGUGC-GGGUGa -3'
miRNA:   3'- cauUGGCGGCC-ACaGCCAUGgCCCGC- -5'
19323 3' -59 NC_004685.1 + 20883 0.68 0.475623
Target:  5'- cUGACUGCgGGcacgagaaGGUGCCGGGUGa -3'
miRNA:   3'- cAUUGGCGgCCacag----CCAUGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 50875 0.68 0.466037
Target:  5'- -cAGCCGUCGGcGguugcgcgCGGUGCCGcGCGg -3'
miRNA:   3'- caUUGGCGGCCaCa-------GCCAUGGCcCGC- -5'
19323 3' -59 NC_004685.1 + 56157 0.68 0.466037
Target:  5'- -aGACCGCg---GUCGGUGCCucgucgGGGCGg -3'
miRNA:   3'- caUUGGCGgccaCAGCCAUGG------CCCGC- -5'
19323 3' -59 NC_004685.1 + 40566 0.68 0.456552
Target:  5'- -gGACCG-CGGUGUCGaccaccuggGCCGGcGCGg -3'
miRNA:   3'- caUUGGCgGCCACAGCca-------UGGCC-CGC- -5'
19323 3' -59 NC_004685.1 + 23751 0.68 0.456552
Target:  5'- ---gUCGCC-GUGUCGGgcagguccagcuUGCCGGGCa -3'
miRNA:   3'- cauuGGCGGcCACAGCC------------AUGGCCCGc -5'
19323 3' -59 NC_004685.1 + 1768 0.69 0.447172
Target:  5'- ---cCCGCgCGuucgcgcacGUGUCGcGUGCCGGGCu -3'
miRNA:   3'- cauuGGCG-GC---------CACAGC-CAUGGCCCGc -5'
19323 3' -59 NC_004685.1 + 2209 0.69 0.447172
Target:  5'- -cGACCcacagGCCGGauUgGGUGCCGGGUGc -3'
miRNA:   3'- caUUGG-----CGGCCacAgCCAUGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 24956 0.69 0.447172
Target:  5'- -gGGCaCGCCGGUGccgcacaCGGUgaugaacagcgGCCGGGUGu -3'
miRNA:   3'- caUUG-GCGGCCACa------GCCA-----------UGGCCCGC- -5'
19323 3' -59 NC_004685.1 + 13734 0.69 0.4379
Target:  5'- -gGACCGCUGGcagGaCGGcaucGCCGGGCu -3'
miRNA:   3'- caUUGGCGGCCa--CaGCCa---UGGCCCGc -5'
19323 3' -59 NC_004685.1 + 37053 0.69 0.419692
Target:  5'- uGUAGaCGCCGGUGUuguUGGUcgGCCcaggGGGCGg -3'
miRNA:   3'- -CAUUgGCGGCCACA---GCCA--UGG----CCCGC- -5'
19323 3' -59 NC_004685.1 + 42506 0.69 0.415213
Target:  5'- -cAGCCGCCGGUGcugacguguucgCGGUGCUGGccuaugaccgcacaGCGu -3'
miRNA:   3'- caUUGGCGGCCACa-----------GCCAUGGCC--------------CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.