miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19323 5' -53.4 NC_004685.1 + 54079 0.66 0.900341
Target:  5'- -cCAUGUcagGGUCGCCGggGUUguagucgaCGGGg -3'
miRNA:   3'- ccGUGCG---CCAGUGGCuuCAAag------GUCC- -5'
19323 5' -53.4 NC_004685.1 + 13405 0.66 0.900341
Target:  5'- cGGUGCGCGaccuGUCGCCGcuGacccgacgacUCCAGGa -3'
miRNA:   3'- -CCGUGCGC----CAGUGGCuuCaa--------AGGUCC- -5'
19323 5' -53.4 NC_004685.1 + 43246 0.66 0.900341
Target:  5'- aGGCGCGCGGcuaCACCcgcGAAGagacUCGGGc -3'
miRNA:   3'- -CCGUGCGCCa--GUGG---CUUCaaa-GGUCC- -5'
19323 5' -53.4 NC_004685.1 + 39088 0.66 0.900341
Target:  5'- uGGCaACGCGG---CCGAcgGGUUcgCCGGGu -3'
miRNA:   3'- -CCG-UGCGCCaguGGCU--UCAAa-GGUCC- -5'
19323 5' -53.4 NC_004685.1 + 5549 0.66 0.900341
Target:  5'- cGGCACGCuGcgCGCCGAucaGGUggcgagCCGGu -3'
miRNA:   3'- -CCGUGCGcCa-GUGGCU---UCAaa----GGUCc -5'
19323 5' -53.4 NC_004685.1 + 14715 0.66 0.886317
Target:  5'- uGCACGCcgacacGGUgACCGAGGUgucggUguGGg -3'
miRNA:   3'- cCGUGCG------CCAgUGGCUUCAaa---GguCC- -5'
19323 5' -53.4 NC_004685.1 + 14060 0.66 0.886317
Target:  5'- cGGCgcccgcgaGCGCGGcuUCgGCCGAGGcaucCCAGGc -3'
miRNA:   3'- -CCG--------UGCGCC--AG-UGGCUUCaaa-GGUCC- -5'
19323 5' -53.4 NC_004685.1 + 28587 0.66 0.886317
Target:  5'- cGCGCGCGGcgaugaagUACCGcAAGgaUUCCgAGGg -3'
miRNA:   3'- cCGUGCGCCa-------GUGGC-UUCa-AAGG-UCC- -5'
19323 5' -53.4 NC_004685.1 + 23470 0.66 0.878927
Target:  5'- cGCugGCGuUCGCCGAGcGggUCaAGGa -3'
miRNA:   3'- cCGugCGCcAGUGGCUU-CaaAGgUCC- -5'
19323 5' -53.4 NC_004685.1 + 1276 0.66 0.878927
Target:  5'- cGCGCGUGGcgCAUCGGAc---CCGGGg -3'
miRNA:   3'- cCGUGCGCCa-GUGGCUUcaaaGGUCC- -5'
19323 5' -53.4 NC_004685.1 + 33071 0.66 0.871291
Target:  5'- aGGUGCGCGGcaaaaCACCGGAGcgcaccgcCCAGu -3'
miRNA:   3'- -CCGUGCGCCa----GUGGCUUCaaa-----GGUCc -5'
19323 5' -53.4 NC_004685.1 + 46380 0.66 0.871291
Target:  5'- gGGcCACGCGGUUcUCGgcGUggCCGcGGg -3'
miRNA:   3'- -CC-GUGCGCCAGuGGCuuCAaaGGU-CC- -5'
19323 5' -53.4 NC_004685.1 + 29154 0.66 0.871291
Target:  5'- cGC-UGCGGUCggauaGCCGAacAGUccggCCAGGa -3'
miRNA:   3'- cCGuGCGCCAG-----UGGCU--UCAaa--GGUCC- -5'
19323 5' -53.4 NC_004685.1 + 10221 0.67 0.855308
Target:  5'- cGGCugGcCGGUCuggccGCCGggGUgUCggauuggaugCGGGa -3'
miRNA:   3'- -CCGugC-GCCAG-----UGGCuuCAaAG----------GUCC- -5'
19323 5' -53.4 NC_004685.1 + 5465 0.67 0.855308
Target:  5'- cGGCGCG-GGUCAuCCGgcGcggUUCguGGc -3'
miRNA:   3'- -CCGUGCgCCAGU-GGCuuCa--AAGguCC- -5'
19323 5' -53.4 NC_004685.1 + 37522 0.67 0.846974
Target:  5'- uGGCGCGCuguGGUgGCCGc-GUUcaUCCAGc -3'
miRNA:   3'- -CCGUGCG---CCAgUGGCuuCAA--AGGUCc -5'
19323 5' -53.4 NC_004685.1 + 30491 0.67 0.838424
Target:  5'- cGGCGCGUGGagcguuCCGggGUccUUCagCGGGg -3'
miRNA:   3'- -CCGUGCGCCagu---GGCuuCA--AAG--GUCC- -5'
19323 5' -53.4 NC_004685.1 + 59970 0.67 0.838424
Target:  5'- cGGCACGgcCGGUCACCGcgc---CCAGc -3'
miRNA:   3'- -CCGUGC--GCCAGUGGCuucaaaGGUCc -5'
19323 5' -53.4 NC_004685.1 + 9716 0.67 0.829663
Target:  5'- uGgGCGCGGUgACCGGccgugCCGGGc -3'
miRNA:   3'- cCgUGCGCCAgUGGCUucaaaGGUCC- -5'
19323 5' -53.4 NC_004685.1 + 30712 0.67 0.820702
Target:  5'- cGGUACGCGccgccGUCGCCGAug--UCCAc- -3'
miRNA:   3'- -CCGUGCGC-----CAGUGGCUucaaAGGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.