miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19324 3' -57.2 NC_004685.1 + 61737 0.66 0.669086
Target:  5'- uGGCCa-GCCgGAUGAUcgccgUCGCCAGCGu -3'
miRNA:   3'- -CCGGcgCGG-CUACUAa----GGUGGUCGUu -5'
19324 3' -57.2 NC_004685.1 + 10423 0.66 0.669086
Target:  5'- aGGCUGgGCCGGaGGg--CAUCAGCAAu -3'
miRNA:   3'- -CCGGCgCGGCUaCUaagGUGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 41519 0.66 0.669086
Target:  5'- uGCCGUGCuCGGUGGUcUCCuuGCgCAGCu- -3'
miRNA:   3'- cCGGCGCG-GCUACUA-AGG--UG-GUCGuu -5'
19324 3' -57.2 NC_004685.1 + 46017 0.66 0.66801
Target:  5'- gGGCCGUagucguaGCCGGUGccguacUCCagcagGCCGGCGAc -3'
miRNA:   3'- -CCGGCG-------CGGCUACua----AGG-----UGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 28316 0.66 0.666934
Target:  5'- uGCgGUGCCGGUGuccuugaagaUCACCAGCGc -3'
miRNA:   3'- cCGgCGCGGCUACuaa-------GGUGGUCGUu -5'
19324 3' -57.2 NC_004685.1 + 2577 0.66 0.658313
Target:  5'- cGCCGCGCCGA-GcgUCgCAacgaCAGCc- -3'
miRNA:   3'- cCGGCGCGGCUaCuaAG-GUg---GUCGuu -5'
19324 3' -57.2 NC_004685.1 + 43303 0.66 0.647518
Target:  5'- aGUCGCGCUGGgacgagacgaucUGGggUCCGuCCGGCAAg -3'
miRNA:   3'- cCGGCGCGGCU------------ACUa-AGGU-GGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 63120 0.66 0.647518
Target:  5'- aGCCgGUGCCGAg----CUGCCAGCAc -3'
miRNA:   3'- cCGG-CGCGGCUacuaaGGUGGUCGUu -5'
19324 3' -57.2 NC_004685.1 + 64222 0.66 0.647518
Target:  5'- -aCCGCGCCgGAUGAccCgCGCCGGCc- -3'
miRNA:   3'- ccGGCGCGG-CUACUaaG-GUGGUCGuu -5'
19324 3' -57.2 NC_004685.1 + 53234 0.66 0.647518
Target:  5'- cGGUCGCGCCGGgcaggCCuACCAGa-- -3'
miRNA:   3'- -CCGGCGCGGCUacuaaGG-UGGUCguu -5'
19324 3' -57.2 NC_004685.1 + 37659 0.66 0.647518
Target:  5'- cGCuCGuCGCCuugGggUCCACCGGCGGg -3'
miRNA:   3'- cCG-GC-GCGGcuaCuaAGGUGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 11141 0.66 0.636709
Target:  5'- uGGCCGaCGCCaccaacGggUUCACCGGCGc -3'
miRNA:   3'- -CCGGC-GCGGcua---CuaAGGUGGUCGUu -5'
19324 3' -57.2 NC_004685.1 + 32809 0.66 0.636709
Target:  5'- cGGCCGCgGCCGAcGAUgUUGCCGGaCGc -3'
miRNA:   3'- -CCGGCG-CGGCUaCUAaGGUGGUC-GUu -5'
19324 3' -57.2 NC_004685.1 + 68743 0.66 0.636709
Target:  5'- aGG-CGCGCgGAUGcgggUUgACCAGCAGa -3'
miRNA:   3'- -CCgGCGCGgCUACua--AGgUGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 55054 0.66 0.635628
Target:  5'- cGGUCGC-CgCGGUGGUUuccaucgCCAUCAGCAGc -3'
miRNA:   3'- -CCGGCGcG-GCUACUAA-------GGUGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 45216 0.66 0.625896
Target:  5'- cGGCCGaGCCgGGUGAUUCg--CAGCAGg -3'
miRNA:   3'- -CCGGCgCGG-CUACUAAGgugGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 37615 0.66 0.625896
Target:  5'- uGGCCGC-UCGgcGcGUUCC-CCAGCGAu -3'
miRNA:   3'- -CCGGCGcGGCuaC-UAAGGuGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 52230 0.66 0.625896
Target:  5'- aGCgCGCaCCGgcGAUgaCCACCGGCAGg -3'
miRNA:   3'- cCG-GCGcGGCuaCUAa-GGUGGUCGUU- -5'
19324 3' -57.2 NC_004685.1 + 16345 0.66 0.625896
Target:  5'- cGCCGCGCUGGaGGUgCC-CCAGUu- -3'
miRNA:   3'- cCGGCGCGGCUaCUAaGGuGGUCGuu -5'
19324 3' -57.2 NC_004685.1 + 29546 0.66 0.624814
Target:  5'- uGGCCGaggacauCGCCGccAUGAccgacaacUUCCGCCAGUu- -3'
miRNA:   3'- -CCGGC-------GCGGC--UACU--------AAGGUGGUCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.