miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19324 5' -57.3 NC_004685.1 + 49981 0.66 0.652586
Target:  5'- ----aCCUGCGUCGGCUguUCGuaggGGaCCGCc -3'
miRNA:   3'- uaagaGGACGCGGUCGA--AGC----UC-GGCG- -5'
19324 5' -57.3 NC_004685.1 + 41533 0.66 0.630924
Target:  5'- -gUCUCCuUGCG-CAGCUccUCGGuGuuGCg -3'
miRNA:   3'- uaAGAGG-ACGCgGUCGA--AGCU-CggCG- -5'
19324 5' -57.3 NC_004685.1 + 2410 0.66 0.620089
Target:  5'- cGUUCUCgCaGUGCCAGaCgaCGcGGCCGCc -3'
miRNA:   3'- -UAAGAG-GaCGCGGUC-GaaGC-UCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 55424 0.66 0.620089
Target:  5'- -gUCgguggCCU-CGCCggucucGGCUUCGcGCCGCa -3'
miRNA:   3'- uaAGa----GGAcGCGG------UCGAAGCuCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 39206 0.66 0.609265
Target:  5'- --gCUCCacGCGCCgccuggcggcGGCUUCGGcGCCGg -3'
miRNA:   3'- uaaGAGGa-CGCGG----------UCGAAGCU-CGGCg -5'
19324 5' -57.3 NC_004685.1 + 54889 0.66 0.609265
Target:  5'- --cCUCCUGCaauguggaguacGCCgcggccacgucGGCUUggcUGAGCCGCu -3'
miRNA:   3'- uaaGAGGACG------------CGG-----------UCGAA---GCUCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 28486 0.67 0.602779
Target:  5'- gGUUCUCC-GCGacaccaggcagagcaUCAGCgauguggucgCGGGCCGCg -3'
miRNA:   3'- -UAAGAGGaCGC---------------GGUCGaa--------GCUCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 21958 0.67 0.59846
Target:  5'- --gCUCCgagGCGCgCAGCUaCGaAGUCGUc -3'
miRNA:   3'- uaaGAGGa--CGCG-GUCGAaGC-UCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 55591 0.67 0.587682
Target:  5'- -aUCUgCUGCaCCAGC--CGGGUCGCc -3'
miRNA:   3'- uaAGAgGACGcGGUCGaaGCUCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 46126 0.67 0.587682
Target:  5'- --aCUCCUGCGCCaucagaggauGGCgggGuGCUGCg -3'
miRNA:   3'- uaaGAGGACGCGG----------UCGaagCuCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 23914 0.67 0.587682
Target:  5'- --cCUCgUugcGCGCCAGCgugUCGAGCagacucauCGCg -3'
miRNA:   3'- uaaGAGgA---CGCGGUCGa--AGCUCG--------GCG- -5'
19324 5' -57.3 NC_004685.1 + 9590 0.67 0.576941
Target:  5'- uGUUCUCCUGCcCCAucGgUUCGGGCgaggGCa -3'
miRNA:   3'- -UAAGAGGACGcGGU--CgAAGCUCGg---CG- -5'
19324 5' -57.3 NC_004685.1 + 66808 0.67 0.576941
Target:  5'- ---aUCCUG-GCCAGCgccgugCGcaccGGCCGCa -3'
miRNA:   3'- uaagAGGACgCGGUCGaa----GC----UCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 28757 0.67 0.566244
Target:  5'- -gUCUCCcaggaucagcUGCGCCAGCaggcCGAGCgugucaGCg -3'
miRNA:   3'- uaAGAGG----------ACGCGGUCGaa--GCUCGg-----CG- -5'
19324 5' -57.3 NC_004685.1 + 31243 0.67 0.555598
Target:  5'- -cUCgggCCUG-GUCGGCaUCGcGGCCGCg -3'
miRNA:   3'- uaAGa--GGACgCGGUCGaAGC-UCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 45098 0.67 0.545012
Target:  5'- -aUgUCCgGCGCCcGC-UCGGGuCCGCc -3'
miRNA:   3'- uaAgAGGaCGCGGuCGaAGCUC-GGCG- -5'
19324 5' -57.3 NC_004685.1 + 51592 0.68 0.534492
Target:  5'- --cCUCCUGCGCgucgguCAGCUUCu-GCgGCc -3'
miRNA:   3'- uaaGAGGACGCG------GUCGAAGcuCGgCG- -5'
19324 5' -57.3 NC_004685.1 + 43670 0.68 0.513676
Target:  5'- cGUUCUCCggcccGCGCuCGGCgacCG-GCUGCg -3'
miRNA:   3'- -UAAGAGGa----CGCG-GUCGaa-GCuCGGCG- -5'
19324 5' -57.3 NC_004685.1 + 57398 0.68 0.513676
Target:  5'- cAUUCUCCccggucGCGgCGGCUUCG-GCCa- -3'
miRNA:   3'- -UAAGAGGa-----CGCgGUCGAAGCuCGGcg -5'
19324 5' -57.3 NC_004685.1 + 38778 0.68 0.503392
Target:  5'- -gUCgUCCUGCGUugCAGUgcccUCG-GCCGCg -3'
miRNA:   3'- uaAG-AGGACGCG--GUCGa---AGCuCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.