miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19327 3' -57.9 NC_004685.1 + 55634 0.66 0.70741
Target:  5'- gCGCUCGCggGCGCCGaacaggaugcggcugCCguuggCGAACUCGa -3'
miRNA:   3'- gGUGGGUG--CGCGGCa--------------GGa----GCUUGAGC- -5'
19327 3' -57.9 NC_004685.1 + 58438 0.66 0.706388
Target:  5'- cUCACCCGCgGCGUgcaggaUGUCCUCGGuggugauUUCGc -3'
miRNA:   3'- -GGUGGGUG-CGCG------GCAGGAGCUu------GAGC- -5'
19327 3' -57.9 NC_004685.1 + 65998 0.66 0.706388
Target:  5'- aCACCCGCGCcgaGCCGUCggCGucg-CGg -3'
miRNA:   3'- gGUGGGUGCG---CGGCAGgaGCuugaGC- -5'
19327 3' -57.9 NC_004685.1 + 47286 0.66 0.706388
Target:  5'- aCCGCCagucCGCGgccUCGUCCUCGGugUa- -3'
miRNA:   3'- -GGUGGgu--GCGC---GGCAGGAGCUugAgc -5'
19327 3' -57.9 NC_004685.1 + 68082 0.66 0.706388
Target:  5'- -uGCCCGCaGCagGCgGUCCUCGccCUCa -3'
miRNA:   3'- ggUGGGUG-CG--CGgCAGGAGCuuGAGc -5'
19327 3' -57.9 NC_004685.1 + 59987 0.66 0.706388
Target:  5'- gCGCCCAgCGUGUCGauuuccuccaCCUCGAACaUCa -3'
miRNA:   3'- gGUGGGU-GCGCGGCa---------GGAGCUUG-AGc -5'
19327 3' -57.9 NC_004685.1 + 23325 0.66 0.706388
Target:  5'- -gGCCCAa-CGCUGUCacgCGAugUCGg -3'
miRNA:   3'- ggUGGGUgcGCGGCAGga-GCUugAGC- -5'
19327 3' -57.9 NC_004685.1 + 58021 0.66 0.705366
Target:  5'- aCCugCgACGCcuccuugGCC-UCCUCGGGgUCGa -3'
miRNA:   3'- -GGugGgUGCG-------CGGcAGGAGCUUgAGC- -5'
19327 3' -57.9 NC_004685.1 + 47996 0.66 0.696136
Target:  5'- gCCAgUgagCACGCGcCCGUCgUCGAGCg-- -3'
miRNA:   3'- -GGUgG---GUGCGC-GGCAGgAGCUUGagc -5'
19327 3' -57.9 NC_004685.1 + 10216 0.66 0.696136
Target:  5'- gCCGCCCGa--GCUGUCCaacggCGAGCUg- -3'
miRNA:   3'- -GGUGGGUgcgCGGCAGGa----GCUUGAgc -5'
19327 3' -57.9 NC_004685.1 + 48048 0.66 0.696136
Target:  5'- aCCACCUGCaggGUGCCGacccgcUgCUCGAagcACUCGa -3'
miRNA:   3'- -GGUGGGUG---CGCGGC------AgGAGCU---UGAGC- -5'
19327 3' -57.9 NC_004685.1 + 58315 0.66 0.695108
Target:  5'- -gACCUugGUcggcccgGCCGgcacagCCUCGGugUCGg -3'
miRNA:   3'- ggUGGGugCG-------CGGCa-----GGAGCUugAGC- -5'
19327 3' -57.9 NC_004685.1 + 36408 0.66 0.686861
Target:  5'- cCCGCCCugGUGCgCGgcgauaacggcgaaaCCccUGAGCUCGa -3'
miRNA:   3'- -GGUGGGugCGCG-GCa--------------GGa-GCUUGAGC- -5'
19327 3' -57.9 NC_004685.1 + 66442 0.66 0.685828
Target:  5'- gCGCUCACGUaGCCGgacUCCUCGGccgcCUUGg -3'
miRNA:   3'- gGUGGGUGCG-CGGC---AGGAGCUu---GAGC- -5'
19327 3' -57.9 NC_004685.1 + 41373 0.66 0.685828
Target:  5'- -gACCagaGCGCgGuuGUCCUUGAuCUCGc -3'
miRNA:   3'- ggUGGg--UGCG-CggCAGGAGCUuGAGC- -5'
19327 3' -57.9 NC_004685.1 + 9083 0.66 0.685828
Target:  5'- aCUGCCCGCGagguguugaaGCCGaUCCgCGAACUg- -3'
miRNA:   3'- -GGUGGGUGCg---------CGGC-AGGaGCUUGAgc -5'
19327 3' -57.9 NC_004685.1 + 66852 0.66 0.683761
Target:  5'- -gACCCGCGUGCCcaagcccccacCCUCGAcgccacGCUCa -3'
miRNA:   3'- ggUGGGUGCGCGGca---------GGAGCU------UGAGc -5'
19327 3' -57.9 NC_004685.1 + 62981 0.66 0.675474
Target:  5'- gUCACCgucaGgGUGCCGcccaCCUCGGGCUCc -3'
miRNA:   3'- -GGUGGg---UgCGCGGCa---GGAGCUUGAGc -5'
19327 3' -57.9 NC_004685.1 + 61234 0.66 0.675474
Target:  5'- gCACCCGucuuCGCGCCGUacgCgUCGAcgUCGa -3'
miRNA:   3'- gGUGGGU----GCGCGGCA---GgAGCUugAGC- -5'
19327 3' -57.9 NC_004685.1 + 19198 0.66 0.665083
Target:  5'- aCAUCgCACGCGCCGaCC---AGCUCGa -3'
miRNA:   3'- gGUGG-GUGCGCGGCaGGagcUUGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.