miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19327 5' -50.4 NC_004685.1 + 4442 0.66 0.970859
Target:  5'- gGUUGGCGgugccgcuacCGGCAcaaacgucagcguUGCGGGUGCa -3'
miRNA:   3'- -CAGCUGCaucuu-----GCCGU-------------AUGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 25913 0.66 0.969914
Target:  5'- cGUCGACGUcGAcuCGGC----GGGUGCc -3'
miRNA:   3'- -CAGCUGCAuCUu-GCCGuaugCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 33761 0.66 0.969914
Target:  5'- --aGACGUGGuGCGuCGUcGCGGGUGUc -3'
miRNA:   3'- cagCUGCAUCuUGCcGUA-UGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 34801 0.66 0.969914
Target:  5'- cGUCGGCcugaugGUAGAgaccgGCGGCAUcCGuAUGCc -3'
miRNA:   3'- -CAGCUG------CAUCU-----UGCCGUAuGCcUACG- -5'
19327 5' -50.4 NC_004685.1 + 694 0.66 0.969914
Target:  5'- uUCGgcaGCGUGGGugGCGGCGggaGGGUGa -3'
miRNA:   3'- cAGC---UGCAUCU--UGCCGUaugCCUACg -5'
19327 5' -50.4 NC_004685.1 + 7383 0.66 0.963047
Target:  5'- -aCGAUGgucccGACGGCAaGCGG-UGCg -3'
miRNA:   3'- caGCUGCauc--UUGCCGUaUGCCuACG- -5'
19327 5' -50.4 NC_004685.1 + 2299 0.66 0.959233
Target:  5'- uGUCGACc--GGGCcgaGGCuccaGCGGAUGCg -3'
miRNA:   3'- -CAGCUGcauCUUG---CCGua--UGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 20318 0.66 0.955157
Target:  5'- uGUCGAUGUGcccGACgGGCcggACGGcgGCg -3'
miRNA:   3'- -CAGCUGCAUc--UUG-CCGua-UGCCuaCG- -5'
19327 5' -50.4 NC_004685.1 + 21304 0.66 0.955157
Target:  5'- -cUGugGUGGcGCGGCGagGC-GAUGCg -3'
miRNA:   3'- caGCugCAUCuUGCCGUa-UGcCUACG- -5'
19327 5' -50.4 NC_004685.1 + 42848 0.67 0.950814
Target:  5'- -gCGGCGgcaacGGCGGCGgcucaAUGGGUGCg -3'
miRNA:   3'- caGCUGCauc--UUGCCGUa----UGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 3685 0.67 0.950814
Target:  5'- -gCGACGcc-GACGGCucggcGCGGGUGUa -3'
miRNA:   3'- caGCUGCaucUUGCCGua---UGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 48619 0.67 0.946198
Target:  5'- -gCGAUGcgGGAACGGUAUuGCGGugGCg -3'
miRNA:   3'- caGCUGCa-UCUUGCCGUA-UGCCuaCG- -5'
19327 5' -50.4 NC_004685.1 + 20213 0.67 0.941305
Target:  5'- aGUgGGCGUcGAagACGGUGcGCGGAUGa -3'
miRNA:   3'- -CAgCUGCAuCU--UGCCGUaUGCCUACg -5'
19327 5' -50.4 NC_004685.1 + 61337 0.68 0.924947
Target:  5'- uGUCGGgGUAGGACGGCAccGCGccgucguagccGGUGa -3'
miRNA:   3'- -CAGCUgCAUCUUGCCGUa-UGC-----------CUACg -5'
19327 5' -50.4 NC_004685.1 + 1726 0.68 0.924358
Target:  5'- gGUUGACGcGGAgcuugccGCGGCGUccGCGGGcgaugGCa -3'
miRNA:   3'- -CAGCUGCaUCU-------UGCCGUA--UGCCUa----CG- -5'
19327 5' -50.4 NC_004685.1 + 45523 0.68 0.923172
Target:  5'- cGUCGGCGUGcuGAgcGCGGUGaucacgcgggccacUACGGAggGCg -3'
miRNA:   3'- -CAGCUGCAU--CU--UGCCGU--------------AUGCCUa-CG- -5'
19327 5' -50.4 NC_004685.1 + 30714 0.68 0.91707
Target:  5'- uUCGGCGgcgcAGAgugggauguuccgcAUGGCGUguucgacauuccGCGGAUGCu -3'
miRNA:   3'- cAGCUGCa---UCU--------------UGCCGUA------------UGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 63169 0.68 0.912632
Target:  5'- cUUGAUGUcGAccacCGGCucggGCGGGUGCa -3'
miRNA:   3'- cAGCUGCAuCUu---GCCGua--UGCCUACG- -5'
19327 5' -50.4 NC_004685.1 + 32183 0.68 0.912632
Target:  5'- -cCGAgGUGGAGCcguacgcgGGC-UACGGcgGCg -3'
miRNA:   3'- caGCUgCAUCUUG--------CCGuAUGCCuaCG- -5'
19327 5' -50.4 NC_004685.1 + 38303 0.68 0.906054
Target:  5'- cGUCGGCG-AGGACGGUgaaggcGCGGGccuggccgaucUGCg -3'
miRNA:   3'- -CAGCUGCaUCUUGCCGua----UGCCU-----------ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.