miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19328 3' -56.1 NC_004685.1 + 67277 0.66 0.775226
Target:  5'- aGGUUGuUGCgC-UGCUugCGGGCAGCg -3'
miRNA:   3'- -CCAGCuACGgGaACGGcaGCCUGUCG- -5'
19328 3' -56.1 NC_004685.1 + 54103 0.66 0.775226
Target:  5'- aGUCGAcgggGCCgUUGUCGUUcGGCAGa -3'
miRNA:   3'- cCAGCUa---CGGgAACGGCAGcCUGUCg -5'
19328 3' -56.1 NC_004685.1 + 45258 0.66 0.775226
Target:  5'- gGGUCGGgggguUGCCCgaUGCCcaCGGACuGa -3'
miRNA:   3'- -CCAGCU-----ACGGGa-ACGGcaGCCUGuCg -5'
19328 3' -56.1 NC_004685.1 + 39418 0.66 0.772301
Target:  5'- aGGUCGGcgccGCgccaggaggcagauCCUUGCCGUaguccGACAGCu -3'
miRNA:   3'- -CCAGCUa---CG--------------GGAACGGCAgc---CUGUCG- -5'
19328 3' -56.1 NC_004685.1 + 48355 0.66 0.765428
Target:  5'- cGG-CGGUGgCaUUGCCGUagccGACAGCg -3'
miRNA:   3'- -CCaGCUACgGgAACGGCAgc--CUGUCG- -5'
19328 3' -56.1 NC_004685.1 + 3268 0.66 0.765428
Target:  5'- uGagGAUGUgggcaacauCCUggUGCCGUCGGGCcGCc -3'
miRNA:   3'- cCagCUACG---------GGA--ACGGCAGCCUGuCG- -5'
19328 3' -56.1 NC_004685.1 + 24301 0.66 0.762463
Target:  5'- gGGcCGGUGCCCUUcGCgaagaacauacccgCGUCGauCAGCg -3'
miRNA:   3'- -CCaGCUACGGGAA-CG--------------GCAGCcuGUCG- -5'
19328 3' -56.1 NC_004685.1 + 24555 0.66 0.759486
Target:  5'- cGUCGAcgagacGCCCUgcgaagugaggcugGCCaUCGGugAGCc -3'
miRNA:   3'- cCAGCUa-----CGGGAa-------------CGGcAGCCugUCG- -5'
19328 3' -56.1 NC_004685.1 + 17808 0.66 0.755501
Target:  5'- uGGUCGAggcggGCaagCUgcugGCCGgccugaagUCGGugAGCg -3'
miRNA:   3'- -CCAGCUa----CGg--GAa---CGGC--------AGCCugUCG- -5'
19328 3' -56.1 NC_004685.1 + 59372 0.66 0.755501
Target:  5'- -cUCGAUGCCCUUgaGCUGUCcccgcucGCGGUa -3'
miRNA:   3'- ccAGCUACGGGAA--CGGCAGcc-----UGUCG- -5'
19328 3' -56.1 NC_004685.1 + 50624 0.66 0.755501
Target:  5'- aGGaCGAUGgccUCCUUGCgGUCGGgaugcuccgACGGUg -3'
miRNA:   3'- -CCaGCUAC---GGGAACGgCAGCC---------UGUCG- -5'
19328 3' -56.1 NC_004685.1 + 37533 0.66 0.755501
Target:  5'- uGGU-GGUGCCCUg--CGUCGGcacgccCAGCg -3'
miRNA:   3'- -CCAgCUACGGGAacgGCAGCCu-----GUCG- -5'
19328 3' -56.1 NC_004685.1 + 13029 0.66 0.745455
Target:  5'- uGGcCGGaGCCCUUGCCGUUcuACuucGCg -3'
miRNA:   3'- -CCaGCUaCGGGAACGGCAGccUGu--CG- -5'
19328 3' -56.1 NC_004685.1 + 27219 0.66 0.744444
Target:  5'- uGGUgcCGcUGCCCagGCCGUUGGcacccgcACAGUu -3'
miRNA:   3'- -CCA--GCuACGGGaaCGGCAGCC-------UGUCG- -5'
19328 3' -56.1 NC_004685.1 + 61466 0.66 0.735301
Target:  5'- aGcCGAcGCUgUUGUCGUCGGGCAu- -3'
miRNA:   3'- cCaGCUaCGGgAACGGCAGCCUGUcg -5'
19328 3' -56.1 NC_004685.1 + 52960 0.66 0.735301
Target:  5'- cGGUCGGUGUag--GCgGUCGGGuccCAGUc -3'
miRNA:   3'- -CCAGCUACGggaaCGgCAGCCU---GUCG- -5'
19328 3' -56.1 NC_004685.1 + 59543 0.66 0.735301
Target:  5'- ---gGGUGCCUgccaGcCCGUCGGgucGCAGCa -3'
miRNA:   3'- ccagCUACGGGaa--C-GGCAGCC---UGUCG- -5'
19328 3' -56.1 NC_004685.1 + 1902 0.66 0.735301
Target:  5'- cGGcCG-UGCCCgcugcgGCCG-CGGuuGGCg -3'
miRNA:   3'- -CCaGCuACGGGaa----CGGCaGCCugUCG- -5'
19328 3' -56.1 NC_004685.1 + 28919 0.66 0.735301
Target:  5'- -uUCGA--CCCggGCCGcUGGGCGGCg -3'
miRNA:   3'- ccAGCUacGGGaaCGGCaGCCUGUCG- -5'
19328 3' -56.1 NC_004685.1 + 39597 0.66 0.735301
Target:  5'- cGGUCGAUGCCUa----G-CGGACuGCg -3'
miRNA:   3'- -CCAGCUACGGGaacggCaGCCUGuCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.