miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19329 3' -55.4 NC_004685.1 + 41838 0.66 0.794311
Target:  5'- gGCGAcccuccGCGCgGACuGGUCGaggcGCUUGUUGa -3'
miRNA:   3'- -UGCU------UGUGgCUGuCCAGC----UGGACGAC- -5'
19329 3' -55.4 NC_004685.1 + 34152 0.66 0.794311
Target:  5'- aGCGAuccGCGCaagcgCGGCGuGGUCGACCUGa-- -3'
miRNA:   3'- -UGCU---UGUG-----GCUGU-CCAGCUGGACgac -5'
19329 3' -55.4 NC_004685.1 + 9191 0.66 0.784676
Target:  5'- uGCGAACACUGcgAGGUCGauugGCCaUGCg- -3'
miRNA:   3'- -UGCUUGUGGCugUCCAGC----UGG-ACGac -5'
19329 3' -55.4 NC_004685.1 + 40654 0.66 0.784676
Target:  5'- gAUGGACugCGACGcGG-CGACCgcaccGUUGg -3'
miRNA:   3'- -UGCUUGugGCUGU-CCaGCUGGa----CGAC- -5'
19329 3' -55.4 NC_004685.1 + 53767 0.66 0.784676
Target:  5'- -gGAACGCCGcCAccagccGGUCGAUC-GCUGc -3'
miRNA:   3'- ugCUUGUGGCuGU------CCAGCUGGaCGAC- -5'
19329 3' -55.4 NC_004685.1 + 3985 0.66 0.783704
Target:  5'- cGCGGGCAgaCGACAGccggcccgguguaGUCGACggGCUGg -3'
miRNA:   3'- -UGCUUGUg-GCUGUC-------------CAGCUGgaCGAC- -5'
19329 3' -55.4 NC_004685.1 + 23828 0.66 0.767953
Target:  5'- gACGAuCACCGGCAgcaacgcggugagccGGUCGGCCacgacggugccgaUGCg- -3'
miRNA:   3'- -UGCUuGUGGCUGU---------------CCAGCUGG-------------ACGac -5'
19329 3' -55.4 NC_004685.1 + 18018 0.66 0.76496
Target:  5'- cGCGGGCACCGACgAGG-CGcuGCC-GCa- -3'
miRNA:   3'- -UGCUUGUGGCUG-UCCaGC--UGGaCGac -5'
19329 3' -55.4 NC_004685.1 + 53903 0.66 0.763959
Target:  5'- uCGGGCAUCGugGGGUuaccuuccuuccgUGGCgaGCUGg -3'
miRNA:   3'- uGCUUGUGGCugUCCA-------------GCUGgaCGAC- -5'
19329 3' -55.4 NC_004685.1 + 5693 0.66 0.763959
Target:  5'- uGCGAAugauCGgCGACGGGUCGgcgcagaGCCUGUg- -3'
miRNA:   3'- -UGCUU----GUgGCUGUCCAGC-------UGGACGac -5'
19329 3' -55.4 NC_004685.1 + 11136 0.66 0.754899
Target:  5'- cGCGGugGCCGACgccaccaacGGGUUcACCggcGCUGa -3'
miRNA:   3'- -UGCUugUGGCUG---------UCCAGcUGGa--CGAC- -5'
19329 3' -55.4 NC_004685.1 + 8359 0.66 0.747784
Target:  5'- gUGGACACCGACAgcgggucGGUgaugugggaucgcacCGACCUGUcgUGg -3'
miRNA:   3'- uGCUUGUGGCUGU-------CCA---------------GCUGGACG--AC- -5'
19329 3' -55.4 NC_004685.1 + 25435 0.66 0.744717
Target:  5'- uCGGGCGCCaaGAuCGGGcCGGgCUGCUGc -3'
miRNA:   3'- uGCUUGUGG--CU-GUCCaGCUgGACGAC- -5'
19329 3' -55.4 NC_004685.1 + 28840 0.66 0.744717
Target:  5'- cGCGAugAUCGACccGUCGcGCUUGUUGu -3'
miRNA:   3'- -UGCUugUGGCUGucCAGC-UGGACGAC- -5'
19329 3' -55.4 NC_004685.1 + 59312 0.66 0.744717
Target:  5'- gGCGAcGCGCUGcGCAcGGUCGGUCUGCUc -3'
miRNA:   3'- -UGCU-UGUGGC-UGU-CCAGCUGGACGAc -5'
19329 3' -55.4 NC_004685.1 + 68642 0.67 0.734425
Target:  5'- cGCGGcucaACACCGACuGGUgcucgggcugUGGCCUGUa- -3'
miRNA:   3'- -UGCU----UGUGGCUGuCCA----------GCUGGACGac -5'
19329 3' -55.4 NC_004685.1 + 8456 0.67 0.734425
Target:  5'- uACGGcGCGaaGACGGGUgCGGCCgcGCUGg -3'
miRNA:   3'- -UGCU-UGUggCUGUCCA-GCUGGa-CGAC- -5'
19329 3' -55.4 NC_004685.1 + 62090 0.67 0.734425
Target:  5'- gGCGAAguugaccugcuUGCCGACGaacucguugcGGUUGACCggGCUGg -3'
miRNA:   3'- -UGCUU-----------GUGGCUGU----------CCAGCUGGa-CGAC- -5'
19329 3' -55.4 NC_004685.1 + 55892 0.67 0.734425
Target:  5'- cCGAACccGCCGACGGuGUgGGCCaGCa- -3'
miRNA:   3'- uGCUUG--UGGCUGUC-CAgCUGGaCGac -5'
19329 3' -55.4 NC_004685.1 + 40412 0.67 0.724035
Target:  5'- gACGAG-ACCGAguGGcCGACCgGCa- -3'
miRNA:   3'- -UGCUUgUGGCUguCCaGCUGGaCGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.