miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19329 5' -63.4 NC_004685.1 + 61364 0.66 0.370931
Target:  5'- cGUAGCCGGuGAacccGCUCGGCGgGgGCCa -3'
miRNA:   3'- cCGUCGGCC-CUa---CGGGUCGU-CgCGGa -5'
19329 5' -63.4 NC_004685.1 + 39233 0.66 0.370931
Target:  5'- cGGCgccGGCUGGGGgacgggcuUGCCC---AGCGCCUc -3'
miRNA:   3'- -CCG---UCGGCCCU--------ACGGGucgUCGCGGA- -5'
19329 5' -63.4 NC_004685.1 + 55199 0.66 0.370931
Target:  5'- cGUAGCUGGGGUacucGUCCAGCAccucguaGCCUc -3'
miRNA:   3'- cCGUCGGCCCUA----CGGGUCGUcg-----CGGA- -5'
19329 5' -63.4 NC_004685.1 + 48413 0.66 0.370931
Target:  5'- uGGCAGuuGGGcgGUGCCgCguuggccuugGGCA-CGCCUg -3'
miRNA:   3'- -CCGUCggCCC--UACGG-G----------UCGUcGCGGA- -5'
19329 5' -63.4 NC_004685.1 + 5521 0.66 0.361952
Target:  5'- aGCGGCCGGGGUucuacgaGCUggucauCGGCAcgcugcGCGCCg -3'
miRNA:   3'- cCGUCGGCCCUA-------CGG------GUCGU------CGCGGa -5'
19329 5' -63.4 NC_004685.1 + 30442 0.66 0.359529
Target:  5'- aGGC-GCUGGGcaagcccguccCCCAGcCGGCGCCg -3'
miRNA:   3'- -CCGuCGGCCCuac--------GGGUC-GUCGCGGa -5'
19329 5' -63.4 NC_004685.1 + 64097 0.66 0.354719
Target:  5'- aGGUcuGGUCGGGGUcauccGCCCAGCucaccGGCucGCCa -3'
miRNA:   3'- -CCG--UCGGCCCUA-----CGGGUCG-----UCG--CGGa -5'
19329 5' -63.4 NC_004685.1 + 42417 0.66 0.354719
Target:  5'- cGGCAGCacaaaGGuGuggGCaCCGGCGGCGUa- -3'
miRNA:   3'- -CCGUCGg----CC-Cua-CG-GGUCGUCGCGga -5'
19329 5' -63.4 NC_004685.1 + 25437 0.66 0.346802
Target:  5'- gGGCgccaagaucgGGCCGGGcUGCU--GCGGCGCUUc -3'
miRNA:   3'- -CCG----------UCGGCCCuACGGguCGUCGCGGA- -5'
19329 5' -63.4 NC_004685.1 + 3453 0.66 0.346802
Target:  5'- aGCAGaCCGcGGAUGCaCUgagGGCAGC-CCUu -3'
miRNA:   3'- cCGUC-GGC-CCUACG-GG---UCGUCGcGGA- -5'
19329 5' -63.4 NC_004685.1 + 15445 0.66 0.339012
Target:  5'- aGCGGaauCGGGAUGCUCAuGCccGGCGCa- -3'
miRNA:   3'- cCGUCg--GCCCUACGGGU-CG--UCGCGga -5'
19329 5' -63.4 NC_004685.1 + 41973 0.66 0.339012
Target:  5'- aGGaCGGCCGcguGGAagaggugugGCCCGGCGGcCGCUUc -3'
miRNA:   3'- -CC-GUCGGC---CCUa--------CGGGUCGUC-GCGGA- -5'
19329 5' -63.4 NC_004685.1 + 29632 0.66 0.331351
Target:  5'- cGGCagGGCUGGGAaGCCCucaaGGCugucGGCGCg- -3'
miRNA:   3'- -CCG--UCGGCCCUaCGGG----UCG----UCGCGga -5'
19329 5' -63.4 NC_004685.1 + 36942 0.67 0.323817
Target:  5'- uGGCGGCCGGuccaccaCCCGGCucGGCuGCCg -3'
miRNA:   3'- -CCGUCGGCCcuac---GGGUCG--UCG-CGGa -5'
19329 5' -63.4 NC_004685.1 + 57922 0.67 0.323071
Target:  5'- gGGCGgcccgccguccuuGCCGGGAUGCaCCAGacccUGCCg -3'
miRNA:   3'- -CCGU-------------CGGCCCUACG-GGUCguc-GCGGa -5'
19329 5' -63.4 NC_004685.1 + 48109 0.67 0.316412
Target:  5'- aGGCGucGCCGc--UGCCCAGCGcCGCCg -3'
miRNA:   3'- -CCGU--CGGCccuACGGGUCGUcGCGGa -5'
19329 5' -63.4 NC_004685.1 + 21541 0.67 0.316412
Target:  5'- gGGcCAGCCGGGGUGgugCCGGCAugaGCUa -3'
miRNA:   3'- -CC-GUCGGCCCUACg--GGUCGUcg-CGGa -5'
19329 5' -63.4 NC_004685.1 + 36389 0.67 0.316412
Target:  5'- cGGCGGCCuGGGcaacuuccccGCCCuGguGCGCg- -3'
miRNA:   3'- -CCGUCGG-CCCua--------CGGGuCguCGCGga -5'
19329 5' -63.4 NC_004685.1 + 37479 0.67 0.315678
Target:  5'- cGGCGGCgucgacUGGGAgaacccGCCCAGCccuggcgagguguGGCGCgCUg -3'
miRNA:   3'- -CCGUCG------GCCCUa-----CGGGUCG-------------UCGCG-GA- -5'
19329 5' -63.4 NC_004685.1 + 4766 0.67 0.309135
Target:  5'- cGGCgcgcuGGCCGGauacuGUGCCCgcacuucgAGCAcGCGCCg -3'
miRNA:   3'- -CCG-----UCGGCCc----UACGGG--------UCGU-CGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.