miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19331 3' -55.7 NC_004685.1 + 4464 0.67 0.729718
Target:  5'- -gGCGaGugCGUCGA-UGAGACGAGCGc -3'
miRNA:   3'- caCGC-UugGCGGCUgGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 29070 0.67 0.719353
Target:  5'- cGUGCuGACCGCUGGCgCGGcGGCGuucgGCAc -3'
miRNA:   3'- -CACGcUUGGCGGCUG-GCU-CUGCu---UGU- -5'
19331 3' -55.7 NC_004685.1 + 39225 0.67 0.719353
Target:  5'- -gGCGGcuucGgCGCCGGCUggGGGACGGGCu -3'
miRNA:   3'- caCGCU----UgGCGGCUGG--CUCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 16256 0.67 0.718311
Target:  5'- -aGCGAgaccgagGCCGUCGACCu-GAUGGACc -3'
miRNA:   3'- caCGCU-------UGGCGGCUGGcuCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 57923 0.67 0.708905
Target:  5'- -gGCGGcCCGCCGuccuuGCCGGGAUGcACc -3'
miRNA:   3'- caCGCUuGGCGGC-----UGGCUCUGCuUGu -5'
19331 3' -55.7 NC_004685.1 + 19877 0.67 0.708905
Target:  5'- gGUGCGuguuuACuCGCCcGCCaGAGACGggUg -3'
miRNA:   3'- -CACGCu----UG-GCGGcUGG-CUCUGCuuGu -5'
19331 3' -55.7 NC_004685.1 + 18816 0.67 0.698386
Target:  5'- -cGCGcAACCGCCGACgGcuGCGGcuguACAg -3'
miRNA:   3'- caCGC-UUGGCGGCUGgCucUGCU----UGU- -5'
19331 3' -55.7 NC_004685.1 + 2911 0.67 0.698386
Target:  5'- gGUGUG-GCCauGCCGGcCCGAGGUGAGCGa -3'
miRNA:   3'- -CACGCuUGG--CGGCU-GGCUCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 39541 0.67 0.698386
Target:  5'- cUGCGAuggccgggGCUGCCgGGCCGAGuGCGGccGCGa -3'
miRNA:   3'- cACGCU--------UGGCGG-CUGGCUC-UGCU--UGU- -5'
19331 3' -55.7 NC_004685.1 + 48681 0.67 0.69733
Target:  5'- -cGCGGuACCGCCGcgcgaucaccagcACCGGGGCaGACu -3'
miRNA:   3'- caCGCU-UGGCGGC-------------UGGCUCUGcUUGu -5'
19331 3' -55.7 NC_004685.1 + 33319 0.67 0.687805
Target:  5'- -cGuCGGGCgCGgCGACCGcGAUGAACAu -3'
miRNA:   3'- caC-GCUUG-GCgGCUGGCuCUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 5504 0.67 0.687805
Target:  5'- -gGCGGccaucGCCGCCGagcgGCCGGGguucuACGAGCu -3'
miRNA:   3'- caCGCU-----UGGCGGC----UGGCUC-----UGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 26003 0.67 0.687805
Target:  5'- gGUGCGcAGCCgGUCG-CCGAGcGCGGGCc -3'
miRNA:   3'- -CACGC-UUGG-CGGCuGGCUC-UGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 65377 0.67 0.684621
Target:  5'- -cGCGGAgaggcCCGCCGAgucucaaccucaagUCGAGACuGAGCGa -3'
miRNA:   3'- caCGCUU-----GGCGGCU--------------GGCUCUG-CUUGU- -5'
19331 3' -55.7 NC_004685.1 + 67062 0.68 0.677174
Target:  5'- gGUGUGGgcaGCCGUCGcuGCCGAGcaggcCGAGCGg -3'
miRNA:   3'- -CACGCU---UGGCGGC--UGGCUCu----GCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 56296 0.68 0.675042
Target:  5'- -cGCGcACCGgacaguccucgaUGGCCGAGGCGAGCu -3'
miRNA:   3'- caCGCuUGGCg-----------GCUGGCUCUGCUUGu -5'
19331 3' -55.7 NC_004685.1 + 60206 0.68 0.666502
Target:  5'- -aGCGAcccgacGCCGCCGACaaucGCGGGCAg -3'
miRNA:   3'- caCGCU------UGGCGGCUGgcucUGCUUGU- -5'
19331 3' -55.7 NC_004685.1 + 6452 0.68 0.666502
Target:  5'- -cGCGAcaacCCGUCGuGCUGGGACGAcaGCAu -3'
miRNA:   3'- caCGCUu---GGCGGC-UGGCUCUGCU--UGU- -5'
19331 3' -55.7 NC_004685.1 + 34268 0.68 0.655799
Target:  5'- -cGCGucGCCGCUGGaaGAGACGAu-- -3'
miRNA:   3'- caCGCu-UGGCGGCUggCUCUGCUugu -5'
19331 3' -55.7 NC_004685.1 + 56890 0.68 0.655799
Target:  5'- -cGCcAGCCGCuCGGCCuGGGCGAugGc -3'
miRNA:   3'- caCGcUUGGCG-GCUGGcUCUGCUugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.