miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19331 5' -62.9 NC_004685.1 + 27657 0.66 0.406272
Target:  5'- cUCGCgCGCCaccucguugccgUCAGCGuCGAUCGGg- -3'
miRNA:   3'- cAGCGgGCGG------------AGUCGCcGCUAGCCga -5'
19331 5' -62.9 NC_004685.1 + 58415 0.66 0.406272
Target:  5'- aUCGUCCGgUUCAGCGG-GAUcaccucacccgCGGCg -3'
miRNA:   3'- cAGCGGGCgGAGUCGCCgCUA-----------GCCGa -5'
19331 5' -62.9 NC_004685.1 + 37485 0.66 0.406272
Target:  5'- cGUCGacugggagaaCCCGCC-CAGCccuGGCGAggugUGGCg -3'
miRNA:   3'- -CAGC----------GGGCGGaGUCG---CCGCUa---GCCGa -5'
19331 5' -62.9 NC_004685.1 + 6965 0.66 0.405402
Target:  5'- --aGCCCGCagccaUCucggacgcgcaugGGCGGCGAUggaugCGGCUa -3'
miRNA:   3'- cagCGGGCGg----AG-------------UCGCCGCUA-----GCCGA- -5'
19331 5' -62.9 NC_004685.1 + 50856 0.66 0.397628
Target:  5'- -gCGCCUGCCUguaCAGCcgcagccgucGGCGGUUGcGCg -3'
miRNA:   3'- caGCGGGCGGA---GUCG----------CCGCUAGC-CGa -5'
19331 5' -62.9 NC_004685.1 + 386 0.66 0.392499
Target:  5'- aUCGacagCCGCCUCgagcugcucguaggcGGCGGCGAgcUCGGg- -3'
miRNA:   3'- cAGCg---GGCGGAG---------------UCGCCGCU--AGCCga -5'
19331 5' -62.9 NC_004685.1 + 49267 0.66 0.389103
Target:  5'- cUCGCCCGCCUUGGCGGUcucccUCuccuGCa -3'
miRNA:   3'- cAGCGGGCGGAGUCGCCGcu---AGc---CGa -5'
19331 5' -62.9 NC_004685.1 + 16457 0.66 0.372417
Target:  5'- --gGCCUGCC-CGGC-GCGAcCGGCUc -3'
miRNA:   3'- cagCGGGCGGaGUCGcCGCUaGCCGA- -5'
19331 5' -62.9 NC_004685.1 + 41578 0.66 0.372417
Target:  5'- -gCGCCC-CCaCGGUGGaGGUCGGCg -3'
miRNA:   3'- caGCGGGcGGaGUCGCCgCUAGCCGa -5'
19331 5' -62.9 NC_004685.1 + 2590 0.66 0.372417
Target:  5'- cGUCG-CCGCCagGGCGGCauaccgcUCGGCc -3'
miRNA:   3'- -CAGCgGGCGGagUCGCCGcu-----AGCCGa -5'
19331 5' -62.9 NC_004685.1 + 34949 0.66 0.372417
Target:  5'- aGUUGCCCuucacCUUCAGCGuGgaGGUCGGCa -3'
miRNA:   3'- -CAGCGGGc----GGAGUCGC-Cg-CUAGCCGa -5'
19331 5' -62.9 NC_004685.1 + 46796 0.66 0.364259
Target:  5'- gGUCuCCCGaaaCgUCAGCGGCcGAugUCGGCa -3'
miRNA:   3'- -CAGcGGGCg--G-AGUCGCCG-CU--AGCCGa -5'
19331 5' -62.9 NC_004685.1 + 55252 0.66 0.364259
Target:  5'- uUCGCCgccuccuuCGCCUCGGCcucGGCGcgCaGCUg -3'
miRNA:   3'- cAGCGG--------GCGGAGUCG---CCGCuaGcCGA- -5'
19331 5' -62.9 NC_004685.1 + 48933 0.66 0.364259
Target:  5'- cGUCGgcuUCCGCCUCuAGCGGCagccuGAUCcGCa -3'
miRNA:   3'- -CAGC---GGGCGGAG-UCGCCG-----CUAGcCGa -5'
19331 5' -62.9 NC_004685.1 + 8187 0.66 0.364259
Target:  5'- cGUCGCgaCGCCgccG-GGCGGUCGGCc -3'
miRNA:   3'- -CAGCGg-GCGGaguCgCCGCUAGCCGa -5'
19331 5' -62.9 NC_004685.1 + 40614 0.66 0.364259
Target:  5'- -aCG-CCGCCgcgcCAGCGGUcagcacGGUCGGCa -3'
miRNA:   3'- caGCgGGCGGa---GUCGCCG------CUAGCCGa -5'
19331 5' -62.9 NC_004685.1 + 53414 0.67 0.355429
Target:  5'- uGUCGCCgC-CCUCuucgaAGCccuuggcgaugucGGCGGUCGGCa -3'
miRNA:   3'- -CAGCGG-GcGGAG-----UCG-------------CCGCUAGCCGa -5'
19331 5' -62.9 NC_004685.1 + 3762 0.67 0.348316
Target:  5'- uUCGCCCgGCCgaagCucgcgguGCGGCGAUgaucgucaCGGCg -3'
miRNA:   3'- cAGCGGG-CGGa---Gu------CGCCGCUA--------GCCGa -5'
19331 5' -62.9 NC_004685.1 + 49191 0.67 0.348316
Target:  5'- --gGCUgGCUUCGGCGGUGAUgacugcUGGCg -3'
miRNA:   3'- cagCGGgCGGAGUCGCCGCUA------GCCGa -5'
19331 5' -62.9 NC_004685.1 + 19114 0.67 0.348316
Target:  5'- -aCGCCgCGCUggaGGCGGCGc-CGGCg -3'
miRNA:   3'- caGCGG-GCGGag-UCGCCGCuaGCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.