miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19336 3' -55.7 NC_004685.1 + 26595 0.66 0.805287
Target:  5'- cGCGCCgGCGGcaaGUCGGCggcCGAcgugugGCGCa -3'
miRNA:   3'- -CGUGG-UGCCuc-CAGCUGa--GCUa-----CGCG- -5'
19336 3' -55.7 NC_004685.1 + 13092 0.66 0.805287
Target:  5'- aCACgAUGGAGGg-GAU--GAUGCGCg -3'
miRNA:   3'- cGUGgUGCCUCCagCUGagCUACGCG- -5'
19336 3' -55.7 NC_004685.1 + 46099 0.66 0.79597
Target:  5'- -gACCGCGGGGGccgCGACccuugcuggCGAUaCGCu -3'
miRNA:   3'- cgUGGUGCCUCCa--GCUGa--------GCUAcGCG- -5'
19336 3' -55.7 NC_004685.1 + 7377 0.66 0.79597
Target:  5'- cGCuACuCGCGGAuGGUCGACggcaaGGaGUGCu -3'
miRNA:   3'- -CG-UG-GUGCCU-CCAGCUGag---CUaCGCG- -5'
19336 3' -55.7 NC_004685.1 + 37426 0.66 0.79597
Target:  5'- cGCGCCAcCGGcGGcCGACgcggccgCGuucaGCGCg -3'
miRNA:   3'- -CGUGGU-GCCuCCaGCUGa------GCua--CGCG- -5'
19336 3' -55.7 NC_004685.1 + 7766 0.66 0.79597
Target:  5'- cGCAUCGucUGGc-GUCGG-UCGGUGCGCg -3'
miRNA:   3'- -CGUGGU--GCCucCAGCUgAGCUACGCG- -5'
19336 3' -55.7 NC_004685.1 + 16130 0.66 0.79597
Target:  5'- -gGCCACGGuccccuGGaGUCGGCcgCGccGCGCc -3'
miRNA:   3'- cgUGGUGCC------UC-CAGCUGa-GCuaCGCG- -5'
19336 3' -55.7 NC_004685.1 + 61397 0.66 0.786492
Target:  5'- gGCuuCGUGGAGGUCaACUCGGUGUc- -3'
miRNA:   3'- -CGugGUGCCUCCAGcUGAGCUACGcg -5'
19336 3' -55.7 NC_004685.1 + 51718 0.66 0.785536
Target:  5'- cGUACCAaugauggccugauCGGcGGUCGACUCGAacuccgGC-Ca -3'
miRNA:   3'- -CGUGGU-------------GCCuCCAGCUGAGCUa-----CGcG- -5'
19336 3' -55.7 NC_004685.1 + 68195 0.66 0.776863
Target:  5'- -gGCCAgCGGGuucucuacGUCGGCcuagCGGUGCGCg -3'
miRNA:   3'- cgUGGU-GCCUc-------CAGCUGa---GCUACGCG- -5'
19336 3' -55.7 NC_004685.1 + 60427 0.66 0.776863
Target:  5'- cGCAUCACGcGGGGuuUCGGCggccccgGCGCu -3'
miRNA:   3'- -CGUGGUGC-CUCC--AGCUGagcua--CGCG- -5'
19336 3' -55.7 NC_004685.1 + 8908 0.66 0.775893
Target:  5'- gGCGCUggagucgGCGGcGGaUCGACUgGAggcUGUGCa -3'
miRNA:   3'- -CGUGG-------UGCCuCC-AGCUGAgCU---ACGCG- -5'
19336 3' -55.7 NC_004685.1 + 13627 0.66 0.767094
Target:  5'- --cCCGCGGccgAGcaCGACUgGGUGCGCu -3'
miRNA:   3'- cguGGUGCC---UCcaGCUGAgCUACGCG- -5'
19336 3' -55.7 NC_004685.1 + 10886 0.66 0.767094
Target:  5'- aGUGCCgACGGuGGcgugUCGGC-CGAcGCGCu -3'
miRNA:   3'- -CGUGG-UGCCuCC----AGCUGaGCUaCGCG- -5'
19336 3' -55.7 NC_004685.1 + 66567 0.66 0.767094
Target:  5'- gGCcCUGCGGAagcGGUUGGCccUCGGguUGCGCc -3'
miRNA:   3'- -CGuGGUGCCU---CCAGCUG--AGCU--ACGCG- -5'
19336 3' -55.7 NC_004685.1 + 37687 0.66 0.767094
Target:  5'- cGCACCGCcG-GGUCGACcggcUCGGUGaaggucguCGCc -3'
miRNA:   3'- -CGUGGUGcCuCCAGCUG----AGCUAC--------GCG- -5'
19336 3' -55.7 NC_004685.1 + 44739 0.66 0.757195
Target:  5'- aGCGaacCCGCGucGGGGUCGGucUUCGA-GCGCc -3'
miRNA:   3'- -CGU---GGUGC--CUCCAGCU--GAGCUaCGCG- -5'
19336 3' -55.7 NC_004685.1 + 21592 0.66 0.757195
Target:  5'- cGgGCgACGGcuGGGUCGGCacguUCGGugccauccUGCGCg -3'
miRNA:   3'- -CgUGgUGCC--UCCAGCUG----AGCU--------ACGCG- -5'
19336 3' -55.7 NC_004685.1 + 10235 0.66 0.757195
Target:  5'- -gGCCGcCGGGGuGUCgGAUUgGAUGCGg -3'
miRNA:   3'- cgUGGU-GCCUC-CAG-CUGAgCUACGCg -5'
19336 3' -55.7 NC_004685.1 + 39533 0.67 0.747176
Target:  5'- aGCGgCAUGGAGGUCGAggUCG-UGUccaGCa -3'
miRNA:   3'- -CGUgGUGCCUCCAGCUg-AGCuACG---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.