miRNA display CGI


Results 1 - 20 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 53686 0.66 0.515407
Target:  5'- -aCAGGcaGUCGCCGGAgaugaguccguuugGUGCCGGGa -3'
miRNA:   3'- cgGUCUa-CAGCGGCCUg-------------CGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 25993 0.66 0.512464
Target:  5'- aGCCGGGcagggugcgcagccgGUCGCCGaGCGCggGCCGGa- -3'
miRNA:   3'- -CGGUCUa--------------CAGCGGCcUGCG--CGGCCcg -5'
19338 5' -61.4 NC_004685.1 + 16321 0.66 0.511484
Target:  5'- gGCCAGca-UCGCCGcGGCcaccgGCGCCGcGCu -3'
miRNA:   3'- -CGGUCuacAGCGGC-CUG-----CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 55544 0.66 0.511484
Target:  5'- gGCgAGcAUGUCcuGCauGGCGCGuuGGGUg -3'
miRNA:   3'- -CGgUC-UACAG--CGgcCUGCGCggCCCG- -5'
19338 5' -61.4 NC_004685.1 + 59741 0.66 0.511484
Target:  5'- cGCCgcGGAUGgcggUGCCGucgauuuugaGCGCGCCGuuGGCg -3'
miRNA:   3'- -CGG--UCUACa---GCGGCc---------UGCGCGGC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 48330 0.66 0.505622
Target:  5'- uGCCAGAucgccgacgccacguUGUCGgCGGugGCauuGCCGuaGCc -3'
miRNA:   3'- -CGGUCU---------------ACAGCgGCCugCG---CGGCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 19419 0.66 0.501731
Target:  5'- aGCCuGGUGUC-CCGcuacaaGCGCGCCGaacgccgugcguGGCg -3'
miRNA:   3'- -CGGuCUACAGcGGCc-----UGCGCGGC------------CCG- -5'
19338 5' -61.4 NC_004685.1 + 2820 0.66 0.501731
Target:  5'- aGCguGgcGUCGagggUGGGgGCGuuGGGCa -3'
miRNA:   3'- -CGguCuaCAGCg---GCCUgCGCggCCCG- -5'
19338 5' -61.4 NC_004685.1 + 41745 0.66 0.501731
Target:  5'- cGCCAgGAUGUagGCauCGGugGCGuuGacGGCg -3'
miRNA:   3'- -CGGU-CUACAg-CG--GCCugCGCggC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 3285 0.66 0.501731
Target:  5'- uCCuGGUGcCGUCGGGC-CGCCGuGuGCg -3'
miRNA:   3'- cGGuCUACaGCGGCCUGcGCGGC-C-CG- -5'
19338 5' -61.4 NC_004685.1 + 55223 0.66 0.501731
Target:  5'- gGCCAGGUcGaaGCUGGACGacuCGCUGGcGUc -3'
miRNA:   3'- -CGGUCUA-CagCGGCCUGC---GCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 8099 0.66 0.49206
Target:  5'- gGCCGGGucggUGgucaacgCGCUGGcCGagGCCGGGUu -3'
miRNA:   3'- -CGGUCU----ACa------GCGGCCuGCg-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 59789 0.66 0.49206
Target:  5'- cCCAGGUGU-GCgGGACGUaCCcGGCc -3'
miRNA:   3'- cGGUCUACAgCGgCCUGCGcGGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 65579 0.66 0.482476
Target:  5'- -aCAGGUccaUGCCGGACGUGUCGuuguuGGCg -3'
miRNA:   3'- cgGUCUAca-GCGGCCUGCGCGGC-----CCG- -5'
19338 5' -61.4 NC_004685.1 + 23612 0.66 0.482476
Target:  5'- cCCGGGU-UUGCUGGACGCuCCGgcauGGCa -3'
miRNA:   3'- cGGUCUAcAGCGGCCUGCGcGGC----CCG- -5'
19338 5' -61.4 NC_004685.1 + 1805 0.66 0.472983
Target:  5'- gGCCAGcgcGaCGCCGG-CGCGCCGcGa- -3'
miRNA:   3'- -CGGUCua-CaGCGGCCuGCGCGGC-Ccg -5'
19338 5' -61.4 NC_004685.1 + 18473 0.66 0.472983
Target:  5'- aGCUGGAUGgccCGCUGGugGUGCgGauGCg -3'
miRNA:   3'- -CGGUCUACa--GCGGCCugCGCGgCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 626 0.66 0.470154
Target:  5'- aGCCGGAUGUUGgauucgaCGGACaucaGCucuccauuucggcgGCCGGGUc -3'
miRNA:   3'- -CGGUCUACAGCg------GCCUG----CG--------------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 6738 0.66 0.463585
Target:  5'- cGUCAccc--CGCCGGAuCG-GCCGGGCa -3'
miRNA:   3'- -CGGUcuacaGCGGCCU-GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 40934 0.66 0.463585
Target:  5'- aGCCGGAggauucggugcUGUCGCCGuGGauucUGCGgCCGcgcGGCa -3'
miRNA:   3'- -CGGUCU-----------ACAGCGGC-CU----GCGC-GGC---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.