Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 6738 | 0.66 | 0.463585 |
Target: 5'- cGUCAccc--CGCCGGAuCG-GCCGGGCa -3' miRNA: 3'- -CGGUcuacaGCGGCCU-GCgCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 16275 | 0.66 | 0.463585 |
Target: 5'- aCCuGAUGgacCGCUGGaucgagucGCGCuccaaguacGCCGGGCa -3' miRNA: 3'- cGGuCUACa--GCGGCC--------UGCG---------CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 3701 | 0.66 | 0.463585 |
Target: 5'- gGCgCGGGUGUaucgCGCCGaGuACGgGCUGGcGCa -3' miRNA: 3'- -CG-GUCUACA----GCGGC-C-UGCgCGGCC-CG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 626 | 0.66 | 0.470154 |
Target: 5'- aGCCGGAUGUUGgauucgaCGGACaucaGCucuccauuucggcgGCCGGGUc -3' miRNA: 3'- -CGGUCUACAGCg------GCCUG----CG--------------CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 1805 | 0.66 | 0.472983 |
Target: 5'- gGCCAGcgcGaCGCCGG-CGCGCCGcGa- -3' miRNA: 3'- -CGGUCua-CaGCGGCCuGCGCGGC-Ccg -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 65579 | 0.66 | 0.482476 |
Target: 5'- -aCAGGUccaUGCCGGACGUGUCGuuguuGGCg -3' miRNA: 3'- cgGUCUAca-GCGGCCUGCGCGGC-----CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 53714 | 0.67 | 0.454287 |
Target: 5'- aCCGGAUGggguagcCGUCGGAgccgUGCGCCauuGGCa -3' miRNA: 3'- cGGUCUACa------GCGGCCU----GCGCGGc--CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 2218 | 0.67 | 0.417259 |
Target: 5'- gGCCGGAuUGggUGCCGGGugccagaccugccUGCcgcccgGCCGGGCu -3' miRNA: 3'- -CGGUCU-ACa-GCGGCCU-------------GCG------CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 29172 | 0.67 | 0.418141 |
Target: 5'- cGCUgaGGAaaucaacaagcUGUCGCCGGcCGCGCaacaGGCc -3' miRNA: 3'- -CGG--UCU-----------ACAGCGGCCuGCGCGgc--CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 60346 | 0.67 | 0.427014 |
Target: 5'- gGCCuuc-GUCGCCGG-CGaGUCGGGUu -3' miRNA: 3'- -CGGucuaCAGCGGCCuGCgCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 7328 | 0.67 | 0.435998 |
Target: 5'- gGCUGGGU-UCaccaucuacgaGCCGGucaACGgGCCGGGCa -3' miRNA: 3'- -CGGUCUAcAG-----------CGGCC---UGCgCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 52297 | 0.67 | 0.435998 |
Target: 5'- aCCAGGUagaugGUCcccaGCCGGACGCcGUaguagCGGGCc -3' miRNA: 3'- cGGUCUA-----CAG----CGGCCUGCG-CG-----GCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 4394 | 0.67 | 0.435998 |
Target: 5'- cGCCAGccuuguaGUCGCCGGuCGcCGCgCGGa- -3' miRNA: 3'- -CGGUCua-----CAGCGGCCuGC-GCG-GCCcg -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 11406 | 0.67 | 0.435998 |
Target: 5'- cGCCGGGUuUCGgCGGugGCcGCCGcuguGCc -3' miRNA: 3'- -CGGUCUAcAGCgGCCugCG-CGGCc---CG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 68548 | 0.67 | 0.445089 |
Target: 5'- gGCCAguccGAUGcgggCGCCccGAUGCGUCGGGg -3' miRNA: 3'- -CGGU----CUACa---GCGGc-CUGCGCGGCCCg -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 3350 | 0.67 | 0.454287 |
Target: 5'- cGCCuGGAUGa--CCGGGCGgGC-GGGCg -3' miRNA: 3'- -CGG-UCUACagcGGCCUGCgCGgCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 20089 | 0.67 | 0.435998 |
Target: 5'- gGCCAGcc--CGCCuacgaGGGCGCGCgGGuGCu -3' miRNA: 3'- -CGGUCuacaGCGG-----CCUGCGCGgCC-CG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 3540 | 0.67 | 0.454287 |
Target: 5'- aGCCucuuGGUcUUGCCGGugGCGaUCuGGCa -3' miRNA: 3'- -CGGu---CUAcAGCGGCCugCGC-GGcCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 40869 | 0.67 | 0.454287 |
Target: 5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3' miRNA: 3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 9268 | 0.67 | 0.445089 |
Target: 5'- cGCUGGGUGUCG--GGAUGgaGCgGGGCa -3' miRNA: 3'- -CGGUCUACAGCggCCUGCg-CGgCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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