miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 68548 0.67 0.445089
Target:  5'- gGCCAguccGAUGcgggCGCCccGAUGCGUCGGGg -3'
miRNA:   3'- -CGGU----CUACa---GCGGc-CUGCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 11406 0.67 0.435998
Target:  5'- cGCCGGGUuUCGgCGGugGCcGCCGcuguGCc -3'
miRNA:   3'- -CGGUCUAcAGCgGCCugCG-CGGCc---CG- -5'
19338 5' -61.4 NC_004685.1 + 4394 0.67 0.435998
Target:  5'- cGCCAGccuuguaGUCGCCGGuCGcCGCgCGGa- -3'
miRNA:   3'- -CGGUCua-----CAGCGGCCuGC-GCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 3540 0.67 0.454287
Target:  5'- aGCCucuuGGUcUUGCCGGugGCGaUCuGGCa -3'
miRNA:   3'- -CGGu---CUAcAGCGGCCugCGC-GGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 52297 0.67 0.435998
Target:  5'- aCCAGGUagaugGUCcccaGCCGGACGCcGUaguagCGGGCc -3'
miRNA:   3'- cGGUCUA-----CAG----CGGCCUGCG-CG-----GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 40869 0.67 0.454287
Target:  5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3'
miRNA:   3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 2218 0.67 0.417259
Target:  5'- gGCCGGAuUGggUGCCGGGugccagaccugccUGCcgcccgGCCGGGCu -3'
miRNA:   3'- -CGGUCU-ACa-GCGGCCU-------------GCG------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 29172 0.67 0.418141
Target:  5'- cGCUgaGGAaaucaacaagcUGUCGCCGGcCGCGCaacaGGCc -3'
miRNA:   3'- -CGG--UCU-----------ACAGCGGCCuGCGCGgc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 20089 0.67 0.435998
Target:  5'- gGCCAGcc--CGCCuacgaGGGCGCGCgGGuGCu -3'
miRNA:   3'- -CGGUCuacaGCGG-----CCUGCGCGgCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 60346 0.67 0.427014
Target:  5'- gGCCuuc-GUCGCCGG-CGaGUCGGGUu -3'
miRNA:   3'- -CGGucuaCAGCGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 16321 0.66 0.511484
Target:  5'- gGCCAGca-UCGCCGcGGCcaccgGCGCCGcGCu -3'
miRNA:   3'- -CGGUCuacAGCGGC-CUG-----CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 626 0.66 0.470154
Target:  5'- aGCCGGAUGUUGgauucgaCGGACaucaGCucuccauuucggcgGCCGGGUc -3'
miRNA:   3'- -CGGUCUACAGCg------GCCUG----CG--------------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 1805 0.66 0.472983
Target:  5'- gGCCAGcgcGaCGCCGG-CGCGCCGcGa- -3'
miRNA:   3'- -CGGUCua-CaGCGGCCuGCGCGGC-Ccg -5'
19338 5' -61.4 NC_004685.1 + 65579 0.66 0.482476
Target:  5'- -aCAGGUccaUGCCGGACGUGUCGuuguuGGCg -3'
miRNA:   3'- cgGUCUAca-GCGGCCUGCGCGGC-----CCG- -5'
19338 5' -61.4 NC_004685.1 + 8099 0.66 0.49206
Target:  5'- gGCCGGGucggUGgucaacgCGCUGGcCGagGCCGGGUu -3'
miRNA:   3'- -CGGUCU----ACa------GCGGCCuGCg-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 59789 0.66 0.49206
Target:  5'- cCCAGGUGU-GCgGGACGUaCCcGGCc -3'
miRNA:   3'- cGGUCUACAgCGgCCUGCGcGGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 19419 0.66 0.501731
Target:  5'- aGCCuGGUGUC-CCGcuacaaGCGCGCCGaacgccgugcguGGCg -3'
miRNA:   3'- -CGGuCUACAGcGGCc-----UGCGCGGC------------CCG- -5'
19338 5' -61.4 NC_004685.1 + 59741 0.66 0.511484
Target:  5'- cGCCgcGGAUGgcggUGCCGucgauuuugaGCGCGCCGuuGGCg -3'
miRNA:   3'- -CGG--UCUACa---GCGGCc---------UGCGCGGC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 53686 0.66 0.515407
Target:  5'- -aCAGGcaGUCGCCGGAgaugaguccguuugGUGCCGGGa -3'
miRNA:   3'- cgGUCUa-CAGCGGCCUg-------------CGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 25993 0.66 0.512464
Target:  5'- aGCCGGGcagggugcgcagccgGUCGCCGaGCGCggGCCGGa- -3'
miRNA:   3'- -CGGUCUa--------------CAGCGGCcUGCG--CGGCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.