miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 26229 1.12 0.00024
Target:  5'- aGCCAGAUGUCGCCGGACGCGCCGGGCu -3'
miRNA:   3'- -CGGUCUACAGCGGCCUGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 33113 0.9 0.011614
Target:  5'- gGCCAGGUugaucggacccgcGUCGCCGGGCGCGCCGGuGUg -3'
miRNA:   3'- -CGGUCUA-------------CAGCGGCCUGCGCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 53206 0.81 0.052265
Target:  5'- uGCUcGAUGUUcgaguaggucagcgaGCCGGuCGCGCCGGGCa -3'
miRNA:   3'- -CGGuCUACAG---------------CGGCCuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 8176 0.8 0.062528
Target:  5'- gGCCAaAUGaUCGUCGcGACGcCGCCGGGCg -3'
miRNA:   3'- -CGGUcUAC-AGCGGC-CUGC-GCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 10063 0.78 0.079705
Target:  5'- uGCCcgaGGAggcgGUCGCCGaGAUuCGCCGGGCg -3'
miRNA:   3'- -CGG---UCUa---CAGCGGC-CUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 32816 0.77 0.101338
Target:  5'- gGCCGacGAUGUUGCCGGACGCcgcggugucgaGCCGcGCg -3'
miRNA:   3'- -CGGU--CUACAGCGGCCUGCG-----------CGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 60758 0.76 0.112639
Target:  5'- aGgCAGGUGUCguGCCgGGACGUGCCcGGCa -3'
miRNA:   3'- -CgGUCUACAG--CGG-CCUGCGCGGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 26536 0.76 0.115643
Target:  5'- cGCCGcacucGGUgcgcGUCGCCaGGAuCGCGCUGGGCg -3'
miRNA:   3'- -CGGU-----CUA----CAGCGG-CCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 21431 0.75 0.142495
Target:  5'- cGCCA----UCGCacCGGACGUGCUGGGCg -3'
miRNA:   3'- -CGGUcuacAGCG--GCCUGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 32259 0.74 0.157966
Target:  5'- gGCCGcGucgGcCGCCGGugGCGC-GGGCg -3'
miRNA:   3'- -CGGU-Cua-CaGCGGCCugCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 20659 0.74 0.157966
Target:  5'- gGCCAGAUgGUCG-CGGA-GUGCCGcGGCc -3'
miRNA:   3'- -CGGUCUA-CAGCgGCCUgCGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 15131 0.73 0.174939
Target:  5'- cGUCGGAUGgccgUGCUcagguGGugGUGCUGGGCu -3'
miRNA:   3'- -CGGUCUACa---GCGG-----CCugCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 48164 0.73 0.174939
Target:  5'- gGCCcGAUGUgGCCcGGCuCGUCGGGCa -3'
miRNA:   3'- -CGGuCUACAgCGGcCUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 21503 0.73 0.179429
Target:  5'- cGCCGGAgacgGUgcUGCCcGACGaGCCGGGCc -3'
miRNA:   3'- -CGGUCUa---CA--GCGGcCUGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 66282 0.73 0.184021
Target:  5'- gGCCGcugGUCGCCGGAaGCGCUGGuccGCg -3'
miRNA:   3'- -CGGUcuaCAGCGGCCUgCGCGGCC---CG- -5'
19338 5' -61.4 NC_004685.1 + 17453 0.73 0.188716
Target:  5'- uGCCGG-UGgucaUCGCCGGuGCGCGCUGaGGUc -3'
miRNA:   3'- -CGGUCuAC----AGCGGCC-UGCGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 58347 0.73 0.188716
Target:  5'- uGUCGGGgcggGUCGCCGGuCGCGCaCGGc- -3'
miRNA:   3'- -CGGUCUa---CAGCGGCCuGCGCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 32127 0.73 0.192548
Target:  5'- aCCGGGUGgcgcaccgacacCGCUGGGCGUGCCgacgcaGGGCa -3'
miRNA:   3'- cGGUCUACa-----------GCGGCCUGCGCGG------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 36255 0.72 0.198424
Target:  5'- cGCCgaAGAUGUCggcgagcagGCCGG-UGCGCUGcGGCg -3'
miRNA:   3'- -CGG--UCUACAG---------CGGCCuGCGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 2750 0.72 0.2138
Target:  5'- gGCCAGcGUcUCGUCGGGCacgGUGCCGcGGCg -3'
miRNA:   3'- -CGGUC-UAcAGCGGCCUG---CGCGGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.