Results 21 - 40 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 2750 | 0.72 | 0.2138 |
Target: 5'- gGCCAGcGUcUCGUCGGGCacgGUGCCGcGGCg -3' miRNA: 3'- -CGGUC-UAcAGCGGCCUG---CGCGGC-CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 39375 | 0.72 | 0.219148 |
Target: 5'- gGCguGAUGgUGCCGGGaacCGCGCCGgaGGCc -3' miRNA: 3'- -CGguCUACaGCGGCCU---GCGCGGC--CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 46172 | 0.72 | 0.224611 |
Target: 5'- aCCGGG-GUCGCC---CGCGUCGGGCg -3' miRNA: 3'- cGGUCUaCAGCGGccuGCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 69439 | 0.71 | 0.235882 |
Target: 5'- aGUCGG-UGUCGUCGGuguGCGCGUucgucaaacgCGGGCa -3' miRNA: 3'- -CGGUCuACAGCGGCC---UGCGCG----------GCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 37995 | 0.71 | 0.235882 |
Target: 5'- cGCCuGGUGgugaCGCaGGGCGCGaccgCGGGCa -3' miRNA: 3'- -CGGuCUACa---GCGgCCUGCGCg---GCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 29856 | 0.71 | 0.241693 |
Target: 5'- cGCCGuGAUGUCgGCCGGcagcggauCGUcaggGCUGGGCa -3' miRNA: 3'- -CGGU-CUACAG-CGGCCu-------GCG----CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 25786 | 0.71 | 0.253673 |
Target: 5'- aGCCAcacGUGcUCGCCGGGCagcgGCGgUGGGCc -3' miRNA: 3'- -CGGUc--UAC-AGCGGCCUG----CGCgGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 23882 | 0.71 | 0.259222 |
Target: 5'- gGCCGGccGaCGCCGaGACGUucguggugaagugGCUGGGCg -3' miRNA: 3'- -CGGUCuaCaGCGGC-CUGCG-------------CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 39050 | 0.71 | 0.259845 |
Target: 5'- gGCCGGGUcaccGggaaUGCCGGgcacaucgaACGgGCCGGGCa -3' miRNA: 3'- -CGGUCUA----Ca---GCGGCC---------UGCgCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 25423 | 0.71 | 0.259845 |
Target: 5'- uCCuuGGUGUaGUCGGGCGCcaagaucggGCCGGGCu -3' miRNA: 3'- cGGu-CUACAgCGGCCUGCG---------CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 9713 | 0.71 | 0.266138 |
Target: 5'- cGCUGGgcGcggUGaCCGGcCGUGCCGGGCa -3' miRNA: 3'- -CGGUCuaCa--GC-GGCCuGCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 30772 | 0.71 | 0.266138 |
Target: 5'- aGCCGGGUGaCuCCGGcuucgGCaaGCCGGGCg -3' miRNA: 3'- -CGGUCUACaGcGGCC-----UGcgCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 17662 | 0.7 | 0.272553 |
Target: 5'- gGCCaAGAUGUCGaCCGGGgcCGCcCCGGcGUc -3' miRNA: 3'- -CGG-UCUACAGC-GGCCU--GCGcGGCC-CG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 13643 | 0.7 | 0.272553 |
Target: 5'- aCUGGGUG-CGCUGGGCGUGCCcagaGGGg -3' miRNA: 3'- cGGUCUACaGCGGCCUGCGCGG----CCCg -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 37207 | 0.7 | 0.285756 |
Target: 5'- uGCCAGGuUGggcagCGCCGGGgcCGCGCCGa-- -3' miRNA: 3'- -CGGUCU-ACa----GCGGCCU--GCGCGGCccg -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 37704 | 0.7 | 0.285756 |
Target: 5'- uGCCGG-UGUUGuuGacgacgaucGACGgGCCGGGUg -3' miRNA: 3'- -CGGUCuACAGCggC---------CUGCgCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 32359 | 0.7 | 0.292545 |
Target: 5'- gGCgCAGAgGUgGCCGGcaucacCGCGCaGGGCa -3' miRNA: 3'- -CG-GUCUaCAgCGGCCu-----GCGCGgCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 43630 | 0.7 | 0.292545 |
Target: 5'- aGCCAGGgccgacagcgGUCGCCGu-CGCuGCCGcGGUg -3' miRNA: 3'- -CGGUCUa---------CAGCGGCcuGCG-CGGC-CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 66069 | 0.7 | 0.298762 |
Target: 5'- aGCgGGcgGUCGuuGGugccgccguagucGCgGUGCCGGGCc -3' miRNA: 3'- -CGgUCuaCAGCggCC-------------UG-CGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 63234 | 0.7 | 0.299459 |
Target: 5'- cGCCAGggGU-GCCGGGC-UGuUCGGGCc -3' miRNA: 3'- -CGGUCuaCAgCGGCCUGcGC-GGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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