Results 41 - 60 of 116 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 64214 | 0.7 | 0.299459 |
Target: 5'- gGCCAcGAaccgCGCCGGAugaccCGCGCCGGcccGCa -3' miRNA: 3'- -CGGU-CUaca-GCGGCCU-----GCGCGGCC---CG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 24848 | 0.69 | 0.313664 |
Target: 5'- uCCuGAUGuUCGCCcGGCGCaaGCgGGGCa -3' miRNA: 3'- cGGuCUAC-AGCGGcCUGCG--CGgCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 53827 | 0.69 | 0.320221 |
Target: 5'- aGCCcuccuGAagGUCgGCCGGugGCGCUucgaggauucguaGGGCu -3' miRNA: 3'- -CGGu----CUa-CAG-CGGCCugCGCGG-------------CCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 32920 | 0.69 | 0.320956 |
Target: 5'- cGCCA---GUCGaaGGGCGCGCagggauGGGCa -3' miRNA: 3'- -CGGUcuaCAGCggCCUGCGCGg-----CCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 12004 | 0.69 | 0.320956 |
Target: 5'- gGgCAGAUGcucUCGCCGGACGCcaacGCCGa-- -3' miRNA: 3'- -CgGUCUAC---AGCGGCCUGCG----CGGCccg -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 25838 | 0.69 | 0.320956 |
Target: 5'- ---cGAUGcCGCUGGGCGCGaugugaauCUGGGCg -3' miRNA: 3'- cgguCUACaGCGGCCUGCGC--------GGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 10483 | 0.69 | 0.320956 |
Target: 5'- -gCGGcAUGUUGCCGGGUGUGCUggaguGGGCg -3' miRNA: 3'- cgGUC-UACAGCGGCCUGCGCGG-----CCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 41120 | 0.69 | 0.327626 |
Target: 5'- cGCCaaguacaaggagaAGGUGcUCGCCGGugGCGUCuccuggaccGGCg -3' miRNA: 3'- -CGG-------------UCUAC-AGCGGCCugCGCGGc--------CCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 12624 | 0.69 | 0.328374 |
Target: 5'- gGCCGGGcagGaaaUCGaCCGGcugcuCGcCGCCGGGCg -3' miRNA: 3'- -CGGUCUa--C---AGC-GGCCu----GC-GCGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 47085 | 0.69 | 0.328374 |
Target: 5'- cGCCAccaucaucGUCGCCGuGGucacCGUGCUGGGCg -3' miRNA: 3'- -CGGUcua-----CAGCGGC-CU----GCGCGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 65676 | 0.69 | 0.335917 |
Target: 5'- uUCuGGUGUUGgCGcacguCGCGCCGGGCu -3' miRNA: 3'- cGGuCUACAGCgGCcu---GCGCGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 37132 | 0.69 | 0.343587 |
Target: 5'- cGCCGcGAUcugcuccggcGUgGCCGGGcCGaCGCCGGGa -3' miRNA: 3'- -CGGU-CUA----------CAgCGGCCU-GC-GCGGCCCg -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 38249 | 0.69 | 0.343587 |
Target: 5'- cGCCGG-UGUCGguaCCGGGCG-GCaaaccguaGGGCa -3' miRNA: 3'- -CGGUCuACAGC---GGCCUGCgCGg-------CCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 9948 | 0.69 | 0.343587 |
Target: 5'- -aCGGAUcacCGa-GGACGUGCCGGGCu -3' miRNA: 3'- cgGUCUAca-GCggCCUGCGCGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 29987 | 0.69 | 0.350597 |
Target: 5'- cGCCGcGGUcGaCGCCGGugGCGaCCugaucggcaugguGGGCg -3' miRNA: 3'- -CGGU-CUA-CaGCGGCCugCGC-GG-------------CCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 28904 | 0.69 | 0.351382 |
Target: 5'- cGCCGGAaccagGacuUCGacCCGGGC-CGCUGGGCg -3' miRNA: 3'- -CGGUCUa----C---AGC--GGCCUGcGCGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 45196 | 0.69 | 0.351382 |
Target: 5'- cGCCGGcgaccUGUaCGCCGcGGCcgaGCCGGGUg -3' miRNA: 3'- -CGGUCu----ACA-GCGGC-CUGcg-CGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 37705 | 0.68 | 0.358504 |
Target: 5'- gGCUcggugaAGGUcGUCGCCGacggcacgaugaaGGCGCuGCUGGGCa -3' miRNA: 3'- -CGG------UCUA-CAGCGGC-------------CUGCG-CGGCCCG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 69423 | 0.68 | 0.359301 |
Target: 5'- cGCCGGAgca-GCUGGACGCgauugucaccGCCGGucGCa -3' miRNA: 3'- -CGGUCUacagCGGCCUGCG----------CGGCC--CG- -5' |
|||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 23769 | 0.68 | 0.359301 |
Target: 5'- uCCAGc--UUGCCGGGCaGCGCCGaGCg -3' miRNA: 3'- cGGUCuacAGCGGCCUG-CGCGGCcCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home