miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 40934 0.66 0.463585
Target:  5'- aGCCGGAggauucggugcUGUCGCCGuGGauucUGCGgCCGcgcGGCa -3'
miRNA:   3'- -CGGUCU-----------ACAGCGGC-CU----GCGC-GGC---CCG- -5'
19338 5' -61.4 NC_004685.1 + 6738 0.66 0.463585
Target:  5'- cGUCAccc--CGCCGGAuCG-GCCGGGCa -3'
miRNA:   3'- -CGGUcuacaGCGGCCU-GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 16275 0.66 0.463585
Target:  5'- aCCuGAUGgacCGCUGGaucgagucGCGCuccaaguacGCCGGGCa -3'
miRNA:   3'- cGGuCUACa--GCGGCC--------UGCG---------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 37886 0.66 0.463585
Target:  5'- uGCCGGGUGU-GCacguGGAUGuUGCUGGGg -3'
miRNA:   3'- -CGGUCUACAgCGg---CCUGC-GCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 65527 0.66 0.462651
Target:  5'- gGCCGGGUGguuucgaCGCCGGACucccacauuGUGCgguacugCGGGUc -3'
miRNA:   3'- -CGGUCUACa------GCGGCCUG---------CGCG-------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 10542 0.66 0.460786
Target:  5'- gGCCGGGUGgcuUCgacaacgugggcggGCUGGACGUGUucaaggagUGGGCg -3'
miRNA:   3'- -CGGUCUAC---AG--------------CGGCCUGCGCG--------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 53714 0.67 0.454287
Target:  5'- aCCGGAUGggguagcCGUCGGAgccgUGCGCCauuGGCa -3'
miRNA:   3'- cGGUCUACa------GCGGCCU----GCGCGGc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 40869 0.67 0.454287
Target:  5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3'
miRNA:   3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3350 0.67 0.454287
Target:  5'- cGCCuGGAUGa--CCGGGCGgGC-GGGCg -3'
miRNA:   3'- -CGG-UCUACagcGGCCUGCgCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3540 0.67 0.454287
Target:  5'- aGCCucuuGGUcUUGCCGGugGCGaUCuGGCa -3'
miRNA:   3'- -CGGu---CUAcAGCGGCCugCGC-GGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 68548 0.67 0.445089
Target:  5'- gGCCAguccGAUGcgggCGCCccGAUGCGUCGGGg -3'
miRNA:   3'- -CGGU----CUACa---GCGGc-CUGCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 9268 0.67 0.445089
Target:  5'- cGCUGGGUGUCG--GGAUGgaGCgGGGCa -3'
miRNA:   3'- -CGGUCUACAGCggCCUGCg-CGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 7328 0.67 0.435998
Target:  5'- gGCUGGGU-UCaccaucuacgaGCCGGucaACGgGCCGGGCa -3'
miRNA:   3'- -CGGUCUAcAG-----------CGGCC---UGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 52297 0.67 0.435998
Target:  5'- aCCAGGUagaugGUCcccaGCCGGACGCcGUaguagCGGGCc -3'
miRNA:   3'- cGGUCUA-----CAG----CGGCCUGCG-CG-----GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 4394 0.67 0.435998
Target:  5'- cGCCAGccuuguaGUCGCCGGuCGcCGCgCGGa- -3'
miRNA:   3'- -CGGUCua-----CAGCGGCCuGC-GCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 11406 0.67 0.435998
Target:  5'- cGCCGGGUuUCGgCGGugGCcGCCGcuguGCc -3'
miRNA:   3'- -CGGUCUAcAGCgGCCugCG-CGGCc---CG- -5'
19338 5' -61.4 NC_004685.1 + 20089 0.67 0.435998
Target:  5'- gGCCAGcc--CGCCuacgaGGGCGCGCgGGuGCu -3'
miRNA:   3'- -CGGUCuacaGCGG-----CCUGCGCGgCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 60346 0.67 0.427014
Target:  5'- gGCCuuc-GUCGCCGG-CGaGUCGGGUu -3'
miRNA:   3'- -CGGucuaCAGCGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 29172 0.67 0.418141
Target:  5'- cGCUgaGGAaaucaacaagcUGUCGCCGGcCGCGCaacaGGCc -3'
miRNA:   3'- -CGG--UCU-----------ACAGCGGCCuGCGCGgc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 2218 0.67 0.417259
Target:  5'- gGCCGGAuUGggUGCCGGGugccagaccugccUGCcgcccgGCCGGGCu -3'
miRNA:   3'- -CGGUCU-ACa-GCGGCCU-------------GCG------CGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.