miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 10932 0.67 0.40938
Target:  5'- cCUGGAUG-Ca--GGAcCGCGCCGGGCa -3'
miRNA:   3'- cGGUCUACaGcggCCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 63256 0.68 0.400736
Target:  5'- cGCCAGuUGUCGCgCaGGCGCugGCCgaacGGGUu -3'
miRNA:   3'- -CGGUCuACAGCG-GcCUGCG--CGG----CCCG- -5'
19338 5' -61.4 NC_004685.1 + 45511 0.68 0.400736
Target:  5'- uGCCGGuGUGaUCGUCGG-CGUGCUGaGCg -3'
miRNA:   3'- -CGGUC-UAC-AGCGGCCuGCGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 59868 0.68 0.400736
Target:  5'- cGgUAGGUGUgCGCgGGACcaccuCGCCGcGGCg -3'
miRNA:   3'- -CgGUCUACA-GCGgCCUGc----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 5566 0.68 0.400736
Target:  5'- aUCAGGUGgcgaGCCGG-UGaGCUGGGCg -3'
miRNA:   3'- cGGUCUACag--CGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 45668 0.68 0.39731
Target:  5'- cGCCAGAacgcccgacaGCUGGAgguCGgGCUGGGCa -3'
miRNA:   3'- -CGGUCUacag------CGGCCU---GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 35909 0.68 0.392208
Target:  5'- -gCGGucgcUGUCGCCGacaccgcgacGACGCaccacgucucGCCGGGCa -3'
miRNA:   3'- cgGUCu---ACAGCGGC----------CUGCG----------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 43277 0.68 0.391362
Target:  5'- gGCCAucaugucGAUGUUGUaucaGGAguCGCGCUGGGa -3'
miRNA:   3'- -CGGU-------CUACAGCGg---CCU--GCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 6956 0.68 0.383799
Target:  5'- aGCCGGucaa-GCCcgcagccaucucGGACGCGCaUGGGCg -3'
miRNA:   3'- -CGGUCuacagCGG------------CCUGCGCG-GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3225 0.68 0.383799
Target:  5'- uGCCGGGgcgggGUCggggucggGCCGGACcaucgGCGCCGGu- -3'
miRNA:   3'- -CGGUCUa----CAG--------CGGCCUG-----CGCGGCCcg -5'
19338 5' -61.4 NC_004685.1 + 18265 0.68 0.375511
Target:  5'- gGCCAGG-GUCGCCGaccauUGgGCgGGGUa -3'
miRNA:   3'- -CGGUCUaCAGCGGCcu---GCgCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 22445 0.68 0.375511
Target:  5'- aCCAGAUGa-GCCaGAcccuCGCGUCGGGUc -3'
miRNA:   3'- cGGUCUACagCGGcCU----GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 62834 0.68 0.367345
Target:  5'- aGCCGGGgcacccgggGUCacggcgggaGCCGG-UGCGCCugGGGCg -3'
miRNA:   3'- -CGGUCUa--------CAG---------CGGCCuGCGCGG--CCCG- -5'
19338 5' -61.4 NC_004685.1 + 37059 0.68 0.367345
Target:  5'- cGCCGGuguuguugGUCgGCCcaggGGGCGgGCCGGuGCc -3'
miRNA:   3'- -CGGUCua------CAG-CGG----CCUGCgCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 15186 0.68 0.367345
Target:  5'- gGCgCAGAcaucgaaGUCGgCGuGGCGUucGCCGGGCg -3'
miRNA:   3'- -CG-GUCUa------CAGCgGC-CUGCG--CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 49668 0.68 0.362504
Target:  5'- cCCGGcggGUCGCCcgacucgcgcagacgGGugGCGaaccaCCGGGCg -3'
miRNA:   3'- cGGUCua-CAGCGG---------------CCugCGC-----GGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 69423 0.68 0.359301
Target:  5'- cGCCGGAgca-GCUGGACGCgauugucaccGCCGGucGCa -3'
miRNA:   3'- -CGGUCUacagCGGCCUGCG----------CGGCC--CG- -5'
19338 5' -61.4 NC_004685.1 + 23769 0.68 0.359301
Target:  5'- uCCAGc--UUGCCGGGCaGCGCCGaGCg -3'
miRNA:   3'- cGGUCuacAGCGGCCUG-CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 37705 0.68 0.358504
Target:  5'- gGCUcggugaAGGUcGUCGCCGacggcacgaugaaGGCGCuGCUGGGCa -3'
miRNA:   3'- -CGG------UCUA-CAGCGGC-------------CUGCG-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 28904 0.69 0.351382
Target:  5'- cGCCGGAaccagGacuUCGacCCGGGC-CGCUGGGCg -3'
miRNA:   3'- -CGGUCUa----C---AGC--GGCCUGcGCGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.