miRNA display CGI


Results 81 - 100 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 37207 0.7 0.285756
Target:  5'- uGCCAGGuUGggcagCGCCGGGgcCGCGCCGa-- -3'
miRNA:   3'- -CGGUCU-ACa----GCGGCCU--GCGCGGCccg -5'
19338 5' -61.4 NC_004685.1 + 37704 0.7 0.285756
Target:  5'- uGCCGG-UGUUGuuGacgacgaucGACGgGCCGGGUg -3'
miRNA:   3'- -CGGUCuACAGCggC---------CUGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 17662 0.7 0.272553
Target:  5'- gGCCaAGAUGUCGaCCGGGgcCGCcCCGGcGUc -3'
miRNA:   3'- -CGG-UCUACAGC-GGCCU--GCGcGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 13643 0.7 0.272553
Target:  5'- aCUGGGUG-CGCUGGGCGUGCCcagaGGGg -3'
miRNA:   3'- cGGUCUACaGCGGCCUGCGCGG----CCCg -5'
19338 5' -61.4 NC_004685.1 + 9713 0.71 0.266138
Target:  5'- cGCUGGgcGcggUGaCCGGcCGUGCCGGGCa -3'
miRNA:   3'- -CGGUCuaCa--GC-GGCCuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 30772 0.71 0.266138
Target:  5'- aGCCGGGUGaCuCCGGcuucgGCaaGCCGGGCg -3'
miRNA:   3'- -CGGUCUACaGcGGCC-----UGcgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 39050 0.71 0.259845
Target:  5'- gGCCGGGUcaccGggaaUGCCGGgcacaucgaACGgGCCGGGCa -3'
miRNA:   3'- -CGGUCUA----Ca---GCGGCC---------UGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25423 0.71 0.259845
Target:  5'- uCCuuGGUGUaGUCGGGCGCcaagaucggGCCGGGCu -3'
miRNA:   3'- cGGu-CUACAgCGGCCUGCG---------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 23882 0.71 0.259222
Target:  5'- gGCCGGccGaCGCCGaGACGUucguggugaagugGCUGGGCg -3'
miRNA:   3'- -CGGUCuaCaGCGGC-CUGCG-------------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25786 0.71 0.253673
Target:  5'- aGCCAcacGUGcUCGCCGGGCagcgGCGgUGGGCc -3'
miRNA:   3'- -CGGUc--UAC-AGCGGCCUG----CGCgGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 29856 0.71 0.241693
Target:  5'- cGCCGuGAUGUCgGCCGGcagcggauCGUcaggGCUGGGCa -3'
miRNA:   3'- -CGGU-CUACAG-CGGCCu-------GCG----CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 69439 0.71 0.235882
Target:  5'- aGUCGG-UGUCGUCGGuguGCGCGUucgucaaacgCGGGCa -3'
miRNA:   3'- -CGGUCuACAGCGGCC---UGCGCG----------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 37995 0.71 0.235882
Target:  5'- cGCCuGGUGgugaCGCaGGGCGCGaccgCGGGCa -3'
miRNA:   3'- -CGGuCUACa---GCGgCCUGCGCg---GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 46172 0.72 0.224611
Target:  5'- aCCGGG-GUCGCC---CGCGUCGGGCg -3'
miRNA:   3'- cGGUCUaCAGCGGccuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 39375 0.72 0.219148
Target:  5'- gGCguGAUGgUGCCGGGaacCGCGCCGgaGGCc -3'
miRNA:   3'- -CGguCUACaGCGGCCU---GCGCGGC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 5143 0.72 0.2138
Target:  5'- gGCCguuucaAGGUGUUGCCGGAauaugacCGCCGcGGCu -3'
miRNA:   3'- -CGG------UCUACAGCGGCCUgc-----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 2750 0.72 0.2138
Target:  5'- gGCCAGcGUcUCGUCGGGCacgGUGCCGcGGCg -3'
miRNA:   3'- -CGGUC-UAcAGCGGCCUG---CGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 36255 0.72 0.198424
Target:  5'- cGCCgaAGAUGUCggcgagcagGCCGG-UGCGCUGcGGCg -3'
miRNA:   3'- -CGG--UCUACAG---------CGGCCuGCGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 32127 0.73 0.192548
Target:  5'- aCCGGGUGgcgcaccgacacCGCUGGGCGUGCCgacgcaGGGCa -3'
miRNA:   3'- cGGUCUACa-----------GCGGCCUGCGCGG------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 58347 0.73 0.188716
Target:  5'- uGUCGGGgcggGUCGCCGGuCGCGCaCGGc- -3'
miRNA:   3'- -CGGUCUa---CAGCGGCCuGCGCG-GCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.