miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 9948 0.69 0.343587
Target:  5'- -aCGGAUcacCGa-GGACGUGCCGGGCu -3'
miRNA:   3'- cgGUCUAca-GCggCCUGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 10063 0.78 0.079705
Target:  5'- uGCCcgaGGAggcgGUCGCCGaGAUuCGCCGGGCg -3'
miRNA:   3'- -CGG---UCUa---CAGCGGC-CUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 10483 0.69 0.320956
Target:  5'- -gCGGcAUGUUGCCGGGUGUGCUggaguGGGCg -3'
miRNA:   3'- cgGUC-UACAGCGGCCUGCGCGG-----CCCG- -5'
19338 5' -61.4 NC_004685.1 + 10542 0.66 0.460786
Target:  5'- gGCCGGGUGgcuUCgacaacgugggcggGCUGGACGUGUucaaggagUGGGCg -3'
miRNA:   3'- -CGGUCUAC---AG--------------CGGCCUGCGCG--------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 10932 0.67 0.40938
Target:  5'- cCUGGAUG-Ca--GGAcCGCGCCGGGCa -3'
miRNA:   3'- cGGUCUACaGcggCCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 11406 0.67 0.435998
Target:  5'- cGCCGGGUuUCGgCGGugGCcGCCGcuguGCc -3'
miRNA:   3'- -CGGUCUAcAGCgGCCugCG-CGGCc---CG- -5'
19338 5' -61.4 NC_004685.1 + 12004 0.69 0.320956
Target:  5'- gGgCAGAUGcucUCGCCGGACGCcaacGCCGa-- -3'
miRNA:   3'- -CgGUCUAC---AGCGGCCUGCG----CGGCccg -5'
19338 5' -61.4 NC_004685.1 + 12624 0.69 0.328374
Target:  5'- gGCCGGGcagGaaaUCGaCCGGcugcuCGcCGCCGGGCg -3'
miRNA:   3'- -CGGUCUa--C---AGC-GGCCu----GC-GCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 13643 0.7 0.272553
Target:  5'- aCUGGGUG-CGCUGGGCGUGCCcagaGGGg -3'
miRNA:   3'- cGGUCUACaGCGGCCUGCGCGG----CCCg -5'
19338 5' -61.4 NC_004685.1 + 15131 0.73 0.174939
Target:  5'- cGUCGGAUGgccgUGCUcagguGGugGUGCUGGGCu -3'
miRNA:   3'- -CGGUCUACa---GCGG-----CCugCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 15186 0.68 0.367345
Target:  5'- gGCgCAGAcaucgaaGUCGgCGuGGCGUucGCCGGGCg -3'
miRNA:   3'- -CG-GUCUa------CAGCgGC-CUGCG--CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 16275 0.66 0.463585
Target:  5'- aCCuGAUGgacCGCUGGaucgagucGCGCuccaaguacGCCGGGCa -3'
miRNA:   3'- cGGuCUACa--GCGGCC--------UGCG---------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 16321 0.66 0.511484
Target:  5'- gGCCAGca-UCGCCGcGGCcaccgGCGCCGcGCu -3'
miRNA:   3'- -CGGUCuacAGCGGC-CUG-----CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 17453 0.73 0.188716
Target:  5'- uGCCGG-UGgucaUCGCCGGuGCGCGCUGaGGUc -3'
miRNA:   3'- -CGGUCuAC----AGCGGCC-UGCGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 17662 0.7 0.272553
Target:  5'- gGCCaAGAUGUCGaCCGGGgcCGCcCCGGcGUc -3'
miRNA:   3'- -CGG-UCUACAGC-GGCCU--GCGcGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 18265 0.68 0.375511
Target:  5'- gGCCAGG-GUCGCCGaccauUGgGCgGGGUa -3'
miRNA:   3'- -CGGUCUaCAGCGGCcu---GCgCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 18473 0.66 0.472983
Target:  5'- aGCUGGAUGgccCGCUGGugGUGCgGauGCg -3'
miRNA:   3'- -CGGUCUACa--GCGGCCugCGCGgCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 19419 0.66 0.501731
Target:  5'- aGCCuGGUGUC-CCGcuacaaGCGCGCCGaacgccgugcguGGCg -3'
miRNA:   3'- -CGGuCUACAGcGGCc-----UGCGCGGC------------CCG- -5'
19338 5' -61.4 NC_004685.1 + 20089 0.67 0.435998
Target:  5'- gGCCAGcc--CGCCuacgaGGGCGCGCgGGuGCu -3'
miRNA:   3'- -CGGUCuacaGCGG-----CCUGCGCGgCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 20659 0.74 0.157966
Target:  5'- gGCCAGAUgGUCG-CGGA-GUGCCGcGGCc -3'
miRNA:   3'- -CGGUCUA-CAGCgGCCUgCGCGGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.