miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 21431 0.75 0.142495
Target:  5'- cGCCA----UCGCacCGGACGUGCUGGGCg -3'
miRNA:   3'- -CGGUcuacAGCG--GCCUGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 21503 0.73 0.179429
Target:  5'- cGCCGGAgacgGUgcUGCCcGACGaGCCGGGCc -3'
miRNA:   3'- -CGGUCUa---CA--GCGGcCUGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 22445 0.68 0.375511
Target:  5'- aCCAGAUGa-GCCaGAcccuCGCGUCGGGUc -3'
miRNA:   3'- cGGUCUACagCGGcCU----GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 23612 0.66 0.482476
Target:  5'- cCCGGGU-UUGCUGGACGCuCCGgcauGGCa -3'
miRNA:   3'- cGGUCUAcAGCGGCCUGCGcGGC----CCG- -5'
19338 5' -61.4 NC_004685.1 + 23769 0.68 0.359301
Target:  5'- uCCAGc--UUGCCGGGCaGCGCCGaGCg -3'
miRNA:   3'- cGGUCuacAGCGGCCUG-CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 23882 0.71 0.259222
Target:  5'- gGCCGGccGaCGCCGaGACGUucguggugaagugGCUGGGCg -3'
miRNA:   3'- -CGGUCuaCaGCGGC-CUGCG-------------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 24848 0.69 0.313664
Target:  5'- uCCuGAUGuUCGCCcGGCGCaaGCgGGGCa -3'
miRNA:   3'- cGGuCUAC-AGCGGcCUGCG--CGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25423 0.71 0.259845
Target:  5'- uCCuuGGUGUaGUCGGGCGCcaagaucggGCCGGGCu -3'
miRNA:   3'- cGGu-CUACAgCGGCCUGCG---------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25786 0.71 0.253673
Target:  5'- aGCCAcacGUGcUCGCCGGGCagcgGCGgUGGGCc -3'
miRNA:   3'- -CGGUc--UAC-AGCGGCCUG----CGCgGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25838 0.69 0.320956
Target:  5'- ---cGAUGcCGCUGGGCGCGaugugaauCUGGGCg -3'
miRNA:   3'- cgguCUACaGCGGCCUGCGC--------GGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25993 0.66 0.512464
Target:  5'- aGCCGGGcagggugcgcagccgGUCGCCGaGCGCggGCCGGa- -3'
miRNA:   3'- -CGGUCUa--------------CAGCGGCcUGCG--CGGCCcg -5'
19338 5' -61.4 NC_004685.1 + 26229 1.12 0.00024
Target:  5'- aGCCAGAUGUCGCCGGACGCGCCGGGCu -3'
miRNA:   3'- -CGGUCUACAGCGGCCUGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 26536 0.76 0.115643
Target:  5'- cGCCGcacucGGUgcgcGUCGCCaGGAuCGCGCUGGGCg -3'
miRNA:   3'- -CGGU-----CUA----CAGCGG-CCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 28904 0.69 0.351382
Target:  5'- cGCCGGAaccagGacuUCGacCCGGGC-CGCUGGGCg -3'
miRNA:   3'- -CGGUCUa----C---AGC--GGCCUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 29172 0.67 0.418141
Target:  5'- cGCUgaGGAaaucaacaagcUGUCGCCGGcCGCGCaacaGGCc -3'
miRNA:   3'- -CGG--UCU-----------ACAGCGGCCuGCGCGgc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 29856 0.71 0.241693
Target:  5'- cGCCGuGAUGUCgGCCGGcagcggauCGUcaggGCUGGGCa -3'
miRNA:   3'- -CGGU-CUACAG-CGGCCu-------GCG----CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 29987 0.69 0.350597
Target:  5'- cGCCGcGGUcGaCGCCGGugGCGaCCugaucggcaugguGGGCg -3'
miRNA:   3'- -CGGU-CUA-CaGCGGCCugCGC-GG-------------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 30772 0.71 0.266138
Target:  5'- aGCCGGGUGaCuCCGGcuucgGCaaGCCGGGCg -3'
miRNA:   3'- -CGGUCUACaGcGGCC-----UGcgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 32127 0.73 0.192548
Target:  5'- aCCGGGUGgcgcaccgacacCGCUGGGCGUGCCgacgcaGGGCa -3'
miRNA:   3'- cGGUCUACa-----------GCGGCCUGCGCGG------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 32259 0.74 0.157966
Target:  5'- gGCCGcGucgGcCGCCGGugGCGC-GGGCg -3'
miRNA:   3'- -CGGU-Cua-CaGCGGCCugCGCGgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.