miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 59789 0.66 0.49206
Target:  5'- cCCAGGUGU-GCgGGACGUaCCcGGCc -3'
miRNA:   3'- cGGUCUACAgCGgCCUGCGcGGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 59868 0.68 0.400736
Target:  5'- cGgUAGGUGUgCGCgGGACcaccuCGCCGcGGCg -3'
miRNA:   3'- -CgGUCUACA-GCGgCCUGc----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 60346 0.67 0.427014
Target:  5'- gGCCuuc-GUCGCCGG-CGaGUCGGGUu -3'
miRNA:   3'- -CGGucuaCAGCGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 60758 0.76 0.112639
Target:  5'- aGgCAGGUGUCguGCCgGGACGUGCCcGGCa -3'
miRNA:   3'- -CgGUCUACAG--CGG-CCUGCGCGGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 62834 0.68 0.367345
Target:  5'- aGCCGGGgcacccgggGUCacggcgggaGCCGG-UGCGCCugGGGCg -3'
miRNA:   3'- -CGGUCUa--------CAG---------CGGCCuGCGCGG--CCCG- -5'
19338 5' -61.4 NC_004685.1 + 63234 0.7 0.299459
Target:  5'- cGCCAGggGU-GCCGGGC-UGuUCGGGCc -3'
miRNA:   3'- -CGGUCuaCAgCGGCCUGcGC-GGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 63256 0.68 0.400736
Target:  5'- cGCCAGuUGUCGCgCaGGCGCugGCCgaacGGGUu -3'
miRNA:   3'- -CGGUCuACAGCG-GcCUGCG--CGG----CCCG- -5'
19338 5' -61.4 NC_004685.1 + 64214 0.7 0.299459
Target:  5'- gGCCAcGAaccgCGCCGGAugaccCGCGCCGGcccGCa -3'
miRNA:   3'- -CGGU-CUaca-GCGGCCU-----GCGCGGCC---CG- -5'
19338 5' -61.4 NC_004685.1 + 65527 0.66 0.462651
Target:  5'- gGCCGGGUGguuucgaCGCCGGACucccacauuGUGCgguacugCGGGUc -3'
miRNA:   3'- -CGGUCUACa------GCGGCCUG---------CGCG-------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 65579 0.66 0.482476
Target:  5'- -aCAGGUccaUGCCGGACGUGUCGuuguuGGCg -3'
miRNA:   3'- cgGUCUAca-GCGGCCUGCGCGGC-----CCG- -5'
19338 5' -61.4 NC_004685.1 + 65676 0.69 0.335917
Target:  5'- uUCuGGUGUUGgCGcacguCGCGCCGGGCu -3'
miRNA:   3'- cGGuCUACAGCgGCcu---GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 66069 0.7 0.298762
Target:  5'- aGCgGGcgGUCGuuGGugccgccguagucGCgGUGCCGGGCc -3'
miRNA:   3'- -CGgUCuaCAGCggCC-------------UG-CGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 66282 0.73 0.184021
Target:  5'- gGCCGcugGUCGCCGGAaGCGCUGGuccGCg -3'
miRNA:   3'- -CGGUcuaCAGCGGCCUgCGCGGCC---CG- -5'
19338 5' -61.4 NC_004685.1 + 68548 0.67 0.445089
Target:  5'- gGCCAguccGAUGcgggCGCCccGAUGCGUCGGGg -3'
miRNA:   3'- -CGGU----CUACa---GCGGc-CUGCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 69423 0.68 0.359301
Target:  5'- cGCCGGAgca-GCUGGACGCgauugucaccGCCGGucGCa -3'
miRNA:   3'- -CGGUCUacagCGGCCUGCG----------CGGCC--CG- -5'
19338 5' -61.4 NC_004685.1 + 69439 0.71 0.235882
Target:  5'- aGUCGG-UGUCGUCGGuguGCGCGUucgucaaacgCGGGCa -3'
miRNA:   3'- -CGGUCuACAGCGGCC---UGCGCG----------GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.