miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 53827 0.69 0.320221
Target:  5'- aGCCcuccuGAagGUCgGCCGGugGCGCUucgaggauucguaGGGCu -3'
miRNA:   3'- -CGGu----CUa-CAG-CGGCCugCGCGG-------------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 53714 0.67 0.454287
Target:  5'- aCCGGAUGggguagcCGUCGGAgccgUGCGCCauuGGCa -3'
miRNA:   3'- cGGUCUACa------GCGGCCU----GCGCGGc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 53686 0.66 0.515407
Target:  5'- -aCAGGcaGUCGCCGGAgaugaguccguuugGUGCCGGGa -3'
miRNA:   3'- cgGUCUa-CAGCGGCCUg-------------CGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 53206 0.81 0.052265
Target:  5'- uGCUcGAUGUUcgaguaggucagcgaGCCGGuCGCGCCGGGCa -3'
miRNA:   3'- -CGGuCUACAG---------------CGGCCuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 52297 0.67 0.435998
Target:  5'- aCCAGGUagaugGUCcccaGCCGGACGCcGUaguagCGGGCc -3'
miRNA:   3'- cGGUCUA-----CAG----CGGCCUGCG-CG-----GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 49668 0.68 0.362504
Target:  5'- cCCGGcggGUCGCCcgacucgcgcagacgGGugGCGaaccaCCGGGCg -3'
miRNA:   3'- cGGUCua-CAGCGG---------------CCugCGC-----GGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 48330 0.66 0.505622
Target:  5'- uGCCAGAucgccgacgccacguUGUCGgCGGugGCauuGCCGuaGCc -3'
miRNA:   3'- -CGGUCU---------------ACAGCgGCCugCG---CGGCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 48164 0.73 0.174939
Target:  5'- gGCCcGAUGUgGCCcGGCuCGUCGGGCa -3'
miRNA:   3'- -CGGuCUACAgCGGcCUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 47085 0.69 0.328374
Target:  5'- cGCCAccaucaucGUCGCCGuGGucacCGUGCUGGGCg -3'
miRNA:   3'- -CGGUcua-----CAGCGGC-CU----GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 46172 0.72 0.224611
Target:  5'- aCCGGG-GUCGCC---CGCGUCGGGCg -3'
miRNA:   3'- cGGUCUaCAGCGGccuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 45668 0.68 0.39731
Target:  5'- cGCCAGAacgcccgacaGCUGGAgguCGgGCUGGGCa -3'
miRNA:   3'- -CGGUCUacag------CGGCCU---GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 45511 0.68 0.400736
Target:  5'- uGCCGGuGUGaUCGUCGG-CGUGCUGaGCg -3'
miRNA:   3'- -CGGUC-UAC-AGCGGCCuGCGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 45196 0.69 0.351382
Target:  5'- cGCCGGcgaccUGUaCGCCGcGGCcgaGCCGGGUg -3'
miRNA:   3'- -CGGUCu----ACA-GCGGC-CUGcg-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 44234 0.66 0.463585
Target:  5'- gGCCGuGAUGcacaUCGGGCGCaGCUGGGUg -3'
miRNA:   3'- -CGGU-CUACagc-GGCCUGCG-CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 43630 0.7 0.292545
Target:  5'- aGCCAGGgccgacagcgGUCGCCGu-CGCuGCCGcGGUg -3'
miRNA:   3'- -CGGUCUa---------CAGCGGCcuGCG-CGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 43277 0.68 0.391362
Target:  5'- gGCCAucaugucGAUGUUGUaucaGGAguCGCGCUGGGa -3'
miRNA:   3'- -CGGU-------CUACAGCGg---CCU--GCGCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 41745 0.66 0.501731
Target:  5'- cGCCAgGAUGUagGCauCGGugGCGuuGacGGCg -3'
miRNA:   3'- -CGGU-CUACAg-CG--GCCugCGCggC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 41120 0.69 0.327626
Target:  5'- cGCCaaguacaaggagaAGGUGcUCGCCGGugGCGUCuccuggaccGGCg -3'
miRNA:   3'- -CGG-------------UCUAC-AGCGGCCugCGCGGc--------CCG- -5'
19338 5' -61.4 NC_004685.1 + 40934 0.66 0.463585
Target:  5'- aGCCGGAggauucggugcUGUCGCCGuGGauucUGCGgCCGcgcGGCa -3'
miRNA:   3'- -CGGUCU-----------ACAGCGGC-CU----GCGC-GGC---CCG- -5'
19338 5' -61.4 NC_004685.1 + 40869 0.67 0.454287
Target:  5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3'
miRNA:   3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.