miRNA display CGI


Results 101 - 116 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 7328 0.67 0.435998
Target:  5'- gGCUGGGU-UCaccaucuacgaGCCGGucaACGgGCCGGGCa -3'
miRNA:   3'- -CGGUCUAcAG-----------CGGCC---UGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 6956 0.68 0.383799
Target:  5'- aGCCGGucaa-GCCcgcagccaucucGGACGCGCaUGGGCg -3'
miRNA:   3'- -CGGUCuacagCGG------------CCUGCGCG-GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 6738 0.66 0.463585
Target:  5'- cGUCAccc--CGCCGGAuCG-GCCGGGCa -3'
miRNA:   3'- -CGGUcuacaGCGGCCU-GCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 5566 0.68 0.400736
Target:  5'- aUCAGGUGgcgaGCCGG-UGaGCUGGGCg -3'
miRNA:   3'- cGGUCUACag--CGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 5143 0.72 0.2138
Target:  5'- gGCCguuucaAGGUGUUGCCGGAauaugacCGCCGcGGCu -3'
miRNA:   3'- -CGG------UCUACAGCGGCCUgc-----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 4394 0.67 0.435998
Target:  5'- cGCCAGccuuguaGUCGCCGGuCGcCGCgCGGa- -3'
miRNA:   3'- -CGGUCua-----CAGCGGCCuGC-GCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 3701 0.66 0.463585
Target:  5'- gGCgCGGGUGUaucgCGCCGaGuACGgGCUGGcGCa -3'
miRNA:   3'- -CG-GUCUACA----GCGGC-C-UGCgCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 3540 0.67 0.454287
Target:  5'- aGCCucuuGGUcUUGCCGGugGCGaUCuGGCa -3'
miRNA:   3'- -CGGu---CUAcAGCGGCCugCGC-GGcCCG- -5'
19338 5' -61.4 NC_004685.1 + 3350 0.67 0.454287
Target:  5'- cGCCuGGAUGa--CCGGGCGgGC-GGGCg -3'
miRNA:   3'- -CGG-UCUACagcGGCCUGCgCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 3285 0.66 0.501731
Target:  5'- uCCuGGUGcCGUCGGGC-CGCCGuGuGCg -3'
miRNA:   3'- cGGuCUACaGCGGCCUGcGCGGC-C-CG- -5'
19338 5' -61.4 NC_004685.1 + 3225 0.68 0.383799
Target:  5'- uGCCGGGgcgggGUCggggucggGCCGGACcaucgGCGCCGGu- -3'
miRNA:   3'- -CGGUCUa----CAG--------CGGCCUG-----CGCGGCCcg -5'
19338 5' -61.4 NC_004685.1 + 2820 0.66 0.501731
Target:  5'- aGCguGgcGUCGagggUGGGgGCGuuGGGCa -3'
miRNA:   3'- -CGguCuaCAGCg---GCCUgCGCggCCCG- -5'
19338 5' -61.4 NC_004685.1 + 2750 0.72 0.2138
Target:  5'- gGCCAGcGUcUCGUCGGGCacgGUGCCGcGGCg -3'
miRNA:   3'- -CGGUC-UAcAGCGGCCUG---CGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 2218 0.67 0.417259
Target:  5'- gGCCGGAuUGggUGCCGGGugccagaccugccUGCcgcccgGCCGGGCu -3'
miRNA:   3'- -CGGUCU-ACa-GCGGCCU-------------GCG------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 1805 0.66 0.472983
Target:  5'- gGCCAGcgcGaCGCCGG-CGCGCCGcGa- -3'
miRNA:   3'- -CGGUCua-CaGCGGCCuGCGCGGC-Ccg -5'
19338 5' -61.4 NC_004685.1 + 626 0.66 0.470154
Target:  5'- aGCCGGAUGUUGgauucgaCGGACaucaGCucuccauuucggcgGCCGGGUc -3'
miRNA:   3'- -CGGUCUACAGCg------GCCUG----CG--------------CGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.