miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 41120 0.69 0.327626
Target:  5'- cGCCaaguacaaggagaAGGUGcUCGCCGGugGCGUCuccuggaccGGCg -3'
miRNA:   3'- -CGG-------------UCUAC-AGCGGCCugCGCGGc--------CCG- -5'
19338 5' -61.4 NC_004685.1 + 10483 0.69 0.320956
Target:  5'- -gCGGcAUGUUGCCGGGUGUGCUggaguGGGCg -3'
miRNA:   3'- cgGUC-UACAGCGGCCUGCGCGG-----CCCG- -5'
19338 5' -61.4 NC_004685.1 + 2750 0.72 0.2138
Target:  5'- gGCCAGcGUcUCGUCGGGCacgGUGCCGcGGCg -3'
miRNA:   3'- -CGGUC-UAcAGCGGCCUG---CGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 32127 0.73 0.192548
Target:  5'- aCCGGGUGgcgcaccgacacCGCUGGGCGUGCCgacgcaGGGCa -3'
miRNA:   3'- cGGUCUACa-----------GCGGCCUGCGCGG------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 58347 0.73 0.188716
Target:  5'- uGUCGGGgcggGUCGCCGGuCGCGCaCGGc- -3'
miRNA:   3'- -CGGUCUa---CAGCGGCCuGCGCG-GCCcg -5'
19338 5' -61.4 NC_004685.1 + 48164 0.73 0.174939
Target:  5'- gGCCcGAUGUgGCCcGGCuCGUCGGGCa -3'
miRNA:   3'- -CGGuCUACAgCGGcCUGcGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 20659 0.74 0.157966
Target:  5'- gGCCAGAUgGUCG-CGGA-GUGCCGcGGCc -3'
miRNA:   3'- -CGGUCUA-CAGCgGCCUgCGCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 32259 0.74 0.157966
Target:  5'- gGCCGcGucgGcCGCCGGugGCGC-GGGCg -3'
miRNA:   3'- -CGGU-Cua-CaGCGGCCugCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 21431 0.75 0.142495
Target:  5'- cGCCA----UCGCacCGGACGUGCUGGGCg -3'
miRNA:   3'- -CGGUcuacAGCG--GCCUGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 26536 0.76 0.115643
Target:  5'- cGCCGcacucGGUgcgcGUCGCCaGGAuCGCGCUGGGCg -3'
miRNA:   3'- -CGGU-----CUA----CAGCGG-CCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 37995 0.71 0.235882
Target:  5'- cGCCuGGUGgugaCGCaGGGCGCGaccgCGGGCa -3'
miRNA:   3'- -CGGuCUACa---GCGgCCUGCGCg---GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 25786 0.71 0.253673
Target:  5'- aGCCAcacGUGcUCGCCGGGCagcgGCGgUGGGCc -3'
miRNA:   3'- -CGGUc--UAC-AGCGGCCUG----CGCgGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 53827 0.69 0.320221
Target:  5'- aGCCcuccuGAagGUCgGCCGGugGCGCUucgaggauucguaGGGCu -3'
miRNA:   3'- -CGGu----CUa-CAG-CGGCCugCGCGG-------------CCCG- -5'
19338 5' -61.4 NC_004685.1 + 24848 0.69 0.313664
Target:  5'- uCCuGAUGuUCGCCcGGCGCaaGCgGGGCa -3'
miRNA:   3'- cGGuCUAC-AGCGGcCUGCG--CGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 64214 0.7 0.299459
Target:  5'- gGCCAcGAaccgCGCCGGAugaccCGCGCCGGcccGCa -3'
miRNA:   3'- -CGGU-CUaca-GCGGCCU-----GCGCGGCC---CG- -5'
19338 5' -61.4 NC_004685.1 + 66069 0.7 0.298762
Target:  5'- aGCgGGcgGUCGuuGGugccgccguagucGCgGUGCCGGGCc -3'
miRNA:   3'- -CGgUCuaCAGCggCC-------------UG-CGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 32359 0.7 0.292545
Target:  5'- gGCgCAGAgGUgGCCGGcaucacCGCGCaGGGCa -3'
miRNA:   3'- -CG-GUCUaCAgCGGCCu-----GCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 9713 0.71 0.266138
Target:  5'- cGCUGGgcGcggUGaCCGGcCGUGCCGGGCa -3'
miRNA:   3'- -CGGUCuaCa--GC-GGCCuGCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 30772 0.71 0.266138
Target:  5'- aGCCGGGUGaCuCCGGcuucgGCaaGCCGGGCg -3'
miRNA:   3'- -CGGUCUACaGcGGCC-----UGcgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 23882 0.71 0.259222
Target:  5'- gGCCGGccGaCGCCGaGACGUucguggugaagugGCUGGGCg -3'
miRNA:   3'- -CGGUCuaCaGCGGC-CUGCG-------------CGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.