Results 41 - 60 of 116 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
19338 | 5' | -61.4 | NC_004685.1 | + | 48164 | 0.73 | 0.174939 |
Target: 5'- gGCCcGAUGUgGCCcGGCuCGUCGGGCa -3' miRNA: 3'- -CGGuCUACAgCGGcCUGcGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 20659 | 0.74 | 0.157966 |
Target: 5'- gGCCAGAUgGUCG-CGGA-GUGCCGcGGCc -3' miRNA: 3'- -CGGUCUA-CAGCgGCCUgCGCGGC-CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 32259 | 0.74 | 0.157966 |
Target: 5'- gGCCGcGucgGcCGCCGGugGCGC-GGGCg -3' miRNA: 3'- -CGGU-Cua-CaGCGGCCugCGCGgCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 21431 | 0.75 | 0.142495 |
Target: 5'- cGCCA----UCGCacCGGACGUGCUGGGCg -3' miRNA: 3'- -CGGUcuacAGCG--GCCUGCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 26536 | 0.76 | 0.115643 |
Target: 5'- cGCCGcacucGGUgcgcGUCGCCaGGAuCGCGCUGGGCg -3' miRNA: 3'- -CGGU-----CUA----CAGCGG-CCU-GCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 32359 | 0.7 | 0.292545 |
Target: 5'- gGCgCAGAgGUgGCCGGcaucacCGCGCaGGGCa -3' miRNA: 3'- -CG-GUCUaCAgCGGCCu-----GCGCGgCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 66069 | 0.7 | 0.298762 |
Target: 5'- aGCgGGcgGUCGuuGGugccgccguagucGCgGUGCCGGGCc -3' miRNA: 3'- -CGgUCuaCAGCggCC-------------UG-CGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 69423 | 0.68 | 0.359301 |
Target: 5'- cGCCGGAgca-GCUGGACGCgauugucaccGCCGGucGCa -3' miRNA: 3'- -CGGUCUacagCGGCCUGCG----------CGGCC--CG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 37705 | 0.68 | 0.358504 |
Target: 5'- gGCUcggugaAGGUcGUCGCCGacggcacgaugaaGGCGCuGCUGGGCa -3' miRNA: 3'- -CGG------UCUA-CAGCGGC-------------CUGCG-CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 28904 | 0.69 | 0.351382 |
Target: 5'- cGCCGGAaccagGacuUCGacCCGGGC-CGCUGGGCg -3' miRNA: 3'- -CGGUCUa----C---AGC--GGCCUGcGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 45196 | 0.69 | 0.351382 |
Target: 5'- cGCCGGcgaccUGUaCGCCGcGGCcgaGCCGGGUg -3' miRNA: 3'- -CGGUCu----ACA-GCGGC-CUGcg-CGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 29987 | 0.69 | 0.350597 |
Target: 5'- cGCCGcGGUcGaCGCCGGugGCGaCCugaucggcaugguGGGCg -3' miRNA: 3'- -CGGU-CUA-CaGCGGCCugCGC-GG-------------CCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 9948 | 0.69 | 0.343587 |
Target: 5'- -aCGGAUcacCGa-GGACGUGCCGGGCu -3' miRNA: 3'- cgGUCUAca-GCggCCUGCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 65676 | 0.69 | 0.335917 |
Target: 5'- uUCuGGUGUUGgCGcacguCGCGCCGGGCu -3' miRNA: 3'- cGGuCUACAGCgGCcu---GCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 47085 | 0.69 | 0.328374 |
Target: 5'- cGCCAccaucaucGUCGCCGuGGucacCGUGCUGGGCg -3' miRNA: 3'- -CGGUcua-----CAGCGGC-CU----GCGCGGCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 41120 | 0.69 | 0.327626 |
Target: 5'- cGCCaaguacaaggagaAGGUGcUCGCCGGugGCGUCuccuggaccGGCg -3' miRNA: 3'- -CGG-------------UCUAC-AGCGGCCugCGCGGc--------CCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 10483 | 0.69 | 0.320956 |
Target: 5'- -gCGGcAUGUUGCCGGGUGUGCUggaguGGGCg -3' miRNA: 3'- cgGUC-UACAGCGGCCUGCGCGG-----CCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 53827 | 0.69 | 0.320221 |
Target: 5'- aGCCcuccuGAagGUCgGCCGGugGCGCUucgaggauucguaGGGCu -3' miRNA: 3'- -CGGu----CUa-CAG-CGGCCugCGCGG-------------CCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 24848 | 0.69 | 0.313664 |
Target: 5'- uCCuGAUGuUCGCCcGGCGCaaGCgGGGCa -3' miRNA: 3'- cGGuCUAC-AGCGGcCUGCG--CGgCCCG- -5' |
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19338 | 5' | -61.4 | NC_004685.1 | + | 64214 | 0.7 | 0.299459 |
Target: 5'- gGCCAcGAaccgCGCCGGAugaccCGCGCCGGcccGCa -3' miRNA: 3'- -CGGU-CUaca-GCGGCCU-----GCGCGGCC---CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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