miRNA display CGI


Results 81 - 100 of 116 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19338 5' -61.4 NC_004685.1 + 35909 0.68 0.392208
Target:  5'- -gCGGucgcUGUCGCCGacaccgcgacGACGCaccacgucucGCCGGGCa -3'
miRNA:   3'- cgGUCu---ACAGCGGC----------CUGCG----------CGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 5566 0.68 0.400736
Target:  5'- aUCAGGUGgcgaGCCGG-UGaGCUGGGCg -3'
miRNA:   3'- cGGUCUACag--CGGCCuGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 18473 0.66 0.472983
Target:  5'- aGCUGGAUGgccCGCUGGugGUGCgGauGCg -3'
miRNA:   3'- -CGGUCUACa--GCGGCCugCGCGgCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 23612 0.66 0.482476
Target:  5'- cCCGGGU-UUGCUGGACGCuCCGgcauGGCa -3'
miRNA:   3'- cGGUCUAcAGCGGCCUGCGcGGC----CCG- -5'
19338 5' -61.4 NC_004685.1 + 55223 0.66 0.501731
Target:  5'- gGCCAGGUcGaaGCUGGACGacuCGCUGGcGUc -3'
miRNA:   3'- -CGGUCUA-CagCGGCCUGC---GCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 3285 0.66 0.501731
Target:  5'- uCCuGGUGcCGUCGGGC-CGCCGuGuGCg -3'
miRNA:   3'- cGGuCUACaGCGGCCUGcGCGGC-C-CG- -5'
19338 5' -61.4 NC_004685.1 + 41745 0.66 0.501731
Target:  5'- cGCCAgGAUGUagGCauCGGugGCGuuGacGGCg -3'
miRNA:   3'- -CGGU-CUACAg-CG--GCCugCGCggC--CCG- -5'
19338 5' -61.4 NC_004685.1 + 48330 0.66 0.505622
Target:  5'- uGCCAGAucgccgacgccacguUGUCGgCGGugGCauuGCCGuaGCc -3'
miRNA:   3'- -CGGUCU---------------ACAGCgGCCugCG---CGGCc-CG- -5'
19338 5' -61.4 NC_004685.1 + 55544 0.66 0.511484
Target:  5'- gGCgAGcAUGUCcuGCauGGCGCGuuGGGUg -3'
miRNA:   3'- -CGgUC-UACAG--CGgcCUGCGCggCCCG- -5'
19338 5' -61.4 NC_004685.1 + 16321 0.66 0.511484
Target:  5'- gGCCAGca-UCGCCGcGGCcaccgGCGCCGcGCu -3'
miRNA:   3'- -CGGUCuacAGCGGC-CUG-----CGCGGCcCG- -5'
19338 5' -61.4 NC_004685.1 + 37886 0.66 0.463585
Target:  5'- uGCCGGGUGU-GCacguGGAUGuUGCUGGGg -3'
miRNA:   3'- -CGGUCUACAgCGg---CCUGC-GCGGCCCg -5'
19338 5' -61.4 NC_004685.1 + 3701 0.66 0.463585
Target:  5'- gGCgCGGGUGUaucgCGCCGaGuACGgGCUGGcGCa -3'
miRNA:   3'- -CG-GUCUACA----GCGGC-C-UGCgCGGCC-CG- -5'
19338 5' -61.4 NC_004685.1 + 59868 0.68 0.400736
Target:  5'- cGgUAGGUGUgCGCgGGACcaccuCGCCGcGGCg -3'
miRNA:   3'- -CgGUCUACA-GCGgCCUGc----GCGGC-CCG- -5'
19338 5' -61.4 NC_004685.1 + 10932 0.67 0.40938
Target:  5'- cCUGGAUG-Ca--GGAcCGCGCCGGGCa -3'
miRNA:   3'- cGGUCUACaGcggCCU-GCGCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 7328 0.67 0.435998
Target:  5'- gGCUGGGU-UCaccaucuacgaGCCGGucaACGgGCCGGGCa -3'
miRNA:   3'- -CGGUCUAcAG-----------CGGCC---UGCgCGGCCCG- -5'
19338 5' -61.4 NC_004685.1 + 9268 0.67 0.445089
Target:  5'- cGCUGGGUGUCG--GGAUGgaGCgGGGCa -3'
miRNA:   3'- -CGGUCUACAGCggCCUGCg-CGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 40869 0.67 0.454287
Target:  5'- uGCUGGc-GUCGCgGGcCGCGC-GGGCc -3'
miRNA:   3'- -CGGUCuaCAGCGgCCuGCGCGgCCCG- -5'
19338 5' -61.4 NC_004685.1 + 53714 0.67 0.454287
Target:  5'- aCCGGAUGggguagcCGUCGGAgccgUGCGCCauuGGCa -3'
miRNA:   3'- cGGUCUACa------GCGGCCU----GCGCGGc--CCG- -5'
19338 5' -61.4 NC_004685.1 + 10542 0.66 0.460786
Target:  5'- gGCCGGGUGgcuUCgacaacgugggcggGCUGGACGUGUucaaggagUGGGCg -3'
miRNA:   3'- -CGGUCUAC---AG--------------CGGCCUGCGCG--------GCCCG- -5'
19338 5' -61.4 NC_004685.1 + 44234 0.66 0.463585
Target:  5'- gGCCGuGAUGcacaUCGGGCGCaGCUGGGUg -3'
miRNA:   3'- -CGGU-CUACagc-GGCCUGCG-CGGCCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.